Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1827
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0409 - 21896478-21897005,21897098-21897292,21897405-218975... 34 0.15
11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832 31 1.1
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 31 1.1
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 30 1.9
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123... 30 1.9
08_02_0657 - 19749835-19751942,19753123-19753561 29 3.3
02_05_0543 + 29872168-29872767,29873089-29873115 29 3.3
12_01_0322 - 2451062-2451601,2451691-2451792,2452237-2452329,245... 29 4.4
04_04_0789 - 28068819-28068989,28069081-28069477,28069857-280700... 29 4.4
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 29 4.4
01_01_0081 + 623135-623470 29 4.4
01_06_0918 + 32990106-32992196 29 5.8
01_01_0091 - 719842-720902,721042-721071,721521-722226 29 5.8
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 28 7.6
>01_05_0409 -
21896478-21897005,21897098-21897292,21897405-21897542,
21897641-21897728,21897837-21897925,21898032-21898553
Length = 519
Score = 33.9 bits (74), Expect = 0.15
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +1
Query: 400 EQAATKIQAAFRGHRTRKSMS 462
+QAATK+Q F+GHRTR++++
Sbjct: 84 DQAATKVQKLFKGHRTRRNLA 104
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = +3
Query: 681 DLNKAATKIQASFRGHKVRKDV 746
+L++AATK+Q F+GH+ R+++
Sbjct: 82 ELDQAATKVQKLFKGHRTRRNL 103
>11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832
Length = 165
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/61 (36%), Positives = 26/61 (42%)
Frame = +2
Query: 560 RRNQDPGFVPRPPGAEGDSSPXXXXXXXXXXHRENRSDRS*FEQSRDEDPGLIPRSQSAQ 739
+R G VP P A GDS+P HR R++DP PRSQSA
Sbjct: 33 KRKNAGGVVPPPSLARGDSAPPPSG------HRTPPHGAGSSTPQRNKDPASRPRSQSAV 86
Query: 740 G 742
G
Sbjct: 87 G 87
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 391 KSEEQAATKIQAAFRGHRTRKSM 459
K EE AA +IQAAFRG+ R+++
Sbjct: 121 KREEYAAVRIQAAFRGYLARRAL 143
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 397 EEQAATKIQAAFRGHRTRKS 456
EEQAA K QAAFRG+ R++
Sbjct: 110 EEQAAVKAQAAFRGYLARRA 129
>05_01_0177 +
1231679-1231753,1232259-1232546,1232608-1232685,
1233458-1233673,1233862-1233981,1234079-1234804
Length = 500
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 385 GVKSEEQAATKIQAAFRGHRTRKSMS 462
GV EEQA KIQ AFRG+ ++ S
Sbjct: 102 GVSREEQATIKIQTAFRGYLLSENSS 127
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 423 GSVPWSQDKEINEHE--GGQARTLQTRARANKAELEAEFKSDDKELCHAATKIQASFRG 593
G +P ++ E E GQ R + KAELEAE ++ K A K +A +G
Sbjct: 765 GGIPDEEEAPATEPELPVGQLRLVAKPKTKTKAELEAEAEAAAKAKAEAEAKAKAKLKG 823
>02_05_0543 + 29872168-29872767,29873089-29873115
Length = 208
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 397 EEQAATKIQAAFRGHRTRK-SMSMKAAKQEPCKPE 498
++ AA +IQAAFRGH R+ + +++ A E + E
Sbjct: 53 DDAAAARIQAAFRGHLVRRHAAAVRGADDEATRLE 87
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 678 PDLNKAATKIQASFRGHKVRK 740
PD + AA +IQA+FRGH VR+
Sbjct: 52 PD-DAAAARIQAAFRGHLVRR 71
>12_01_0322 -
2451062-2451601,2451691-2451792,2452237-2452329,
2452443-2452589,2453063-2453150,2453338-2453426,
2453698-2453763,2453962-2454076,2454269-2454462
Length = 477
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 385 GVKSEEQAATKIQAAFRGHRTRKSMSMKAAKQE 483
G E+ AATK+Q +R +RTR+ ++ A E
Sbjct: 30 GGGGEDGAATKLQKVYRSYRTRRKLADSAVVVE 62
>04_04_0789 -
28068819-28068989,28069081-28069477,28069857-28070009,
28070698-28070834
Length = 285
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 388 VKSEEQAATKIQAAFRGHRTRKS 456
+ EE AA IQA FRGH R++
Sbjct: 211 ISREEAAAATIQAGFRGHLARRA 233
>01_06_0496 -
29795490-29796638,29796811-29796870,29798168-29798371,
29798739-29798984,29799375-29799464
Length = 582
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 394 SEEQAATKIQAAFRGHRTRKS 456
SEE AA K QAAFRG+ R++
Sbjct: 96 SEELAAVKAQAAFRGYLARRA 116
>01_01_0081 + 623135-623470
Length = 111
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 651 PPYLAFPFPFGLESPSAPGGLGTKPGSW 568
PP PFPF P+ P G+ T+P W
Sbjct: 39 PPATTSPFPF---CPTTPAGISTQPFPW 63
>01_06_0918 + 32990106-32992196
Length = 696
Score = 28.7 bits (61), Expect = 5.8
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = -2
Query: 780 PLRTEAGRLSSGRPCALCD--RGMRPGSSSRLCSNQDRSDLFSRCPPYLAF---PFPFGL 616
P+ + AGR RP LCD R S+ + D + LAF PFP L
Sbjct: 67 PITSSAGRAFFSRPVPLCDPVSRRRASFSTAFSFSIAAPDPSAASGDGLAFFLSPFPSVL 126
Query: 615 ESPSAPGGLGTKPGSWLRRGTVLCH 541
+ SA G LG S+ R G H
Sbjct: 127 PNSSAGGLLGLF-NSFSRGGAAAAH 150
>01_01_0091 - 719842-720902,721042-721071,721521-722226
Length = 598
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Frame = -2
Query: 693 LCSNQDRSDLFSRCPPYLA------FPFPFGLESPSAPGGLGTKPGSWLRRGTVLCHQI 535
+ + D +D F CPP FPF LES S+ G S + T+L H +
Sbjct: 1 MATESDEADFFRNCPPSRCSSDGPDIKFPFRLESSSSSCGAPGMQLSCSGQDTLLLHHV 59
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 385 GVKSEEQAATKIQAAFRGHRTRKSMSMKAAKQE 483
G E+ AATK+Q +R +RTR+ ++ A E
Sbjct: 32 GGGGEDGAATKLQKMYRSYRTRRKLADTAVVVE 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,875,808
Number of Sequences: 37544
Number of extensions: 356000
Number of successful extensions: 1328
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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