Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1827
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    29   3.0  
U42847-3|AAA83605.2|  210|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    28   9.0  

>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +3

Query: 684 LNKAATKIQASFRGHKVRK 740
           L +AATKIQA+++G+ VRK
Sbjct: 551 LGEAATKIQAAYKGYTVRK 569



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 403 QAATKIQAAFRGHRTRK 453
           +AATKIQAA++G+  RK
Sbjct: 553 EAATKIQAAYKGYTVRK 569


>U42847-3|AAA83605.2|  210|Caenorhabditis elegans Hypothetical
           protein F39H12.3 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3

Query: 684 LNKAATKIQASFRGHKVR 737
           ++ AATKIQA+F+GH VR
Sbjct: 81  MDTAATKIQAAFKGHLVR 98



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 501 RANKAELEAEFKSDDKELCHAATKIQASFRGHQAR 605
           RA+  +  AE +     +  AATKIQA+F+GH  R
Sbjct: 64  RADLQKKFAEVERPASPMDTAATKIQAAFKGHLVR 98



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 400 EQAATKIQAAFRGHRTR 450
           + AATKIQAAF+GH  R
Sbjct: 82  DTAATKIQAAFKGHLVR 98



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 397 EEQAATKIQAAFRGHRTRKSMSMKAAKQE 483
           E++AATKIQ+  RG  TRK +  K  K++
Sbjct: 141 EDRAATKIQSEIRGFLTRKHVD-KMKKED 168



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 391 KSEEQAATKIQAAFRGHRTRKSM 459
           K +  AATKIQA  RG  TRK +
Sbjct: 166 KEDTDAATKIQAHIRGFLTRKHL 188


>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 432 PWSQDKEINEHEGGQARTLQTRARANKAELEAEFKSDD 545
           P  +   +   +G + R LQT   A + E EAE+ SDD
Sbjct: 569 PSGKSPFLRHSQGNKPRYLQTTTEAPEEEDEAEYISDD 606


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 432 PWSQDKEINEHEGGQARTLQTRARANKAELEAEFKSDD 545
           P  +   +   +G + R LQT   A + E EAE+ SDD
Sbjct: 569 PSGKSPFLRHSQGNKPRYLQTTTEAPEEEDEAEYISDD 606


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,234
Number of Sequences: 27780
Number of extensions: 308649
Number of successful extensions: 1036
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)