Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1826
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 160 1e-40
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.77
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 27 1.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 4.1
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 5.4
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 5.4
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 26 5.4
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 7.2
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 7.2
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 9.5
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 160 bits (389), Expect = 1e-40
Identities = 71/73 (97%), Positives = 73/73 (100%)
Frame = -3
Query: 255 QSLDDPQTVYDEHLFDILSARTNKRGQINLNHLLNFQFTPRTNSNAFSAPPRRSRGYNTY 76
+SLDDPQTVYDEHLFDILSARTNKRGQINLNHLLNFQFTPRTNSNAFSAPPRRSRGYNTY
Sbjct: 96 ESLDDPQTVYDEHLFDILSARTNKRGQINLNHLLNFQFTPRTNSNAFSAPPRRSRGYNTY 155
Query: 75 GQGSGHHPMDKSK 37
GQGSGHHPMDKS+
Sbjct: 156 GQGSGHHPMDKSR 168
Score = 116 bits (279), Expect = 3e-27
Identities = 56/58 (96%), Positives = 56/58 (96%)
Frame = -1
Query: 419 AKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIGNHL 246
AKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIG L
Sbjct: 41 AKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIGESL 98
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -1
Query: 53 PWINPRYVNTNYRFVVS 3
P RYVN NYRFVVS
Sbjct: 163 PMDKSRYVNANYRFVVS 179
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 460 PTSFLLLPIFPDHLPKLKNIAPI 392
PT +L + PD LP+LKN+ PI
Sbjct: 224 PTGLGVLYVAPDVLPQLKNVPPI 246
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = -1
Query: 416 KTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQSSA 273
K K+HS+ +K + + + P+K +++ +++K K K+ +K+SS+
Sbjct: 167 KRKKHSSKKKSKKKTSTGSALDPKKLEKI--TKKKKKEHKKKDKESSS 212
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 392 RKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQSS 276
+K H+ +K++ RK+ E+K K K +K S
Sbjct: 200 KKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPES 238
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 407 EHSAD-RKPHRNSEKKTQGMPRKNQQLASSERKTKNK--KRLEKQSSAIADSIGNHL 246
+H+ D PH + E+K G P K + +RK NK K + K A+ ++ L
Sbjct: 1250 QHTLDGNSPHPSFEEKHSGDPLKRIDGNNDDRKIDNKLLKTISKSLDALQLTVEEEL 1306
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 359 QGMPRKNQQLASSERKTKNKKRLEKQ 282
+G RKN L +S++KTK K +K+
Sbjct: 1005 KGEKRKNNSLDASDKKTKEKPSSKKK 1030
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = -1
Query: 419 AKTKEHSADRKPHRNSEKKTQGMPRKNQQLASS 321
+K+K H+ H + K++G+PR + +++ +
Sbjct: 166 SKSKSHTTTATTHTSRSSKSKGLPRFSDEVSQA 198
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 5.4
Identities = 7/22 (31%), Positives = 18/22 (81%)
Frame = +3
Query: 9 NKPIVCINISWIYPWDDDQILD 74
++PI+C++++W+ DD+++D
Sbjct: 191 SRPIICLSMAWLV--SDDKVID 210
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 457 TSFLLLPIFPDHLPKLKNIAPIESLIEIPRR 365
+SF+ IFP+H+ I+ +L EI RR
Sbjct: 584 SSFIFYCIFPNHIQHSSGISFFVTLAEIMRR 614
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 413 FWQMIGEYWKKKE*SWEILHLTCSKNYCST 502
F+ +IGE + K +W + C KNY T
Sbjct: 463 FYGLIGERFCKLSRTWRSTYEQCFKNYYET 492
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 326 SSERKTKNKKRLEKQSSAIADSIGNHLMI 240
SS + K + LEK+ + +D+ G H+++
Sbjct: 447 SSIKGNKTNEELEKEFKSTSDNFGKHIIL 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,099
Number of Sequences: 5004
Number of extensions: 45927
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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