Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1826
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0092 - 13329252-13329761,13329957-13330056,13330146-13330354 31 0.80
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 31 1.1
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856... 30 1.4
12_01_0440 - 3478361-3479152,3479163-3479681 29 2.4
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929... 29 2.4
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 29 2.4
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 3.2
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 29 3.2
08_02_0584 - 19010345-19010656,19010959-19011018 29 4.2
08_02_1325 - 26146775-26147247,26147397-26148579 28 5.6
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 28 5.6
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 28 7.4
06_03_0832 + 25190755-25190960,25191869-25191997,25192079-251923... 27 9.8
06_03_0825 - 25109742-25110473,25110546-25110833,25110930-251109... 27 9.8
05_05_0179 + 23022985-23023190,23024099-23024227,23024309-230245... 27 9.8
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657... 27 9.8
01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022 27 9.8
>07_03_0092 - 13329252-13329761,13329957-13330056,13330146-13330354
Length = 272
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = -1
Query: 365 KTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIGNHL----MIRKLSMMNIFLIFYL 198
KT + +K + + KT++ + EK IA G+ + M+ KL M+N+FL+ L
Sbjct: 79 KTWSLDKKVRGMLMDIIKTRHANKDEKLREEIAMECGDEMPTGDMLNKLKMVNMFLLETL 138
Query: 197 RELISVVRLI 168
R L S V LI
Sbjct: 139 R-LYSPVLLI 147
>08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 383 EAFYRRYVL*F-WQMIGEYWKKKE*SWEILHLTCS 484
+ YR + + F WQ G+YWKK+E ++ + C+
Sbjct: 924 DILYRDFPMWFTWQTPGKYWKKREKGGQVGRIVCA 958
>03_05_0351 - 23382786-23382821,23383373-23383634,23384369-23385675,
23385776-23386290,23386379-23386741,23386916-23387284,
23387365-23388057,23388152-23388238,23388354-23388612
Length = 1296
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 383 EAFYRRYVL*F-WQMIGEYWKKKE*SWEILHLTCS 484
+ YR + + F WQ G+YWKK++ ++ + C+
Sbjct: 989 DILYRDFPMWFTWQTAGKYWKKRDRGGQVGRIVCA 1023
>12_01_0440 - 3478361-3479152,3479163-3479681
Length = 436
Score = 29.5 bits (63), Expect = 2.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 27 INISWIYPWDDDQI 68
+ I W+YPW DDQ+
Sbjct: 99 VTIDWVYPWIDDQV 112
>02_03_0226 - 16591383-16592030,16592132-16592211,16592246-16592971,
16593060-16593192,16596839-16597518,16597604-16597666,
16597740-16597916,16598414-16598542,16598638-16598796,
16599057-16599224,16599418-16599519,16599812-16599857
Length = 1036
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 383 EAFYRRYVL*F-WQMIGEYWKKKE*SWEILHLTCS 484
+ YR + + F WQ G+YWKK++ ++ + C+
Sbjct: 939 DILYRDFPMWFTWQTPGKYWKKRDRGGQVGRIVCA 973
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 94 PWI*YLWSRIWSSSHG*IQDMLIQ 23
PWI Y +RIW +HG QD+ IQ
Sbjct: 204 PWIPYTINRIWKETHG-SQDIRIQ 226
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = -1
Query: 416 KTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQ-------SSAIADSI 258
+ KE + + R +K+ + K ++ ERK K KK+ K+ +A+ +S
Sbjct: 139 RRKEREEEERRRRRKDKERRKRKEKERE---RERKKKEKKKRRKEEKKNLGKKAAVTNSW 195
Query: 257 GNHLMIRKLSMMN 219
G + +IR++ M N
Sbjct: 196 GKYGIIREVDMWN 208
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -1
Query: 401 SADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIGNHLMIRKL 231
S ++K N E + P KN++L + E K K+ S +I HL I +
Sbjct: 48 SKNKKTADNEEHDGEQEPSKNKKLKAEESDLNGKATAVKEFSEFCKAIREHLTIEDM 104
>08_02_0584 - 19010345-19010656,19010959-19011018
Length = 123
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 416 KTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQ 282
K KEH+ + KP + ++K + KN + A+ K K +K+ +K+
Sbjct: 18 KDKEHAKEAKPEKEKKEKKE----KNGEEAAKPAKEKKEKKEKKE 58
>08_02_1325 - 26146775-26147247,26147397-26148579
Length = 551
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = -1
Query: 416 KTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNK-KRLEKQSSAIADSIGNHLMI 240
K K+H + K R E+K + R+ + + ++ K+K KR K + +
Sbjct: 17 KEKKHKKESKERRGRERKEKNSDRRKDKHSKKHKREKHKDKRKNKDDDRYTNQTLEKATL 76
Query: 239 RKLSMMN 219
R + N
Sbjct: 77 RNADLDN 83
>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 419 AKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQ 282
A+ ++ A K + N EK+T K ++ A+ ++ T NKK+ KQ
Sbjct: 1014 AEENQNKARPKRNNNEEKQTANSATKGKRKATEDKGT-NKKQKSKQ 1058
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 368 KKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSI 258
++ G+ +NQ+L +R N++R+EK + + SI
Sbjct: 131 RRAFGLTCRNQELRREDRTRGNRRRIEKGTRRVRSSI 167
>06_03_0832 +
25190755-25190960,25191869-25191997,25192079-25192301,
25192447-25192702,25193228-25193685,25193783-25194070,
25194143-25194874
Length = 763
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 368 KKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIGNHLMIRKLSMMNI 216
++++G PR + ++ E +K KK+ +S++ D NH +K S I
Sbjct: 688 RRSRGRPRSTRLMSKGETSSKAKKKKASESTS-KDESKNHAKGKKESTKQI 737
>06_03_0825 -
25109742-25110473,25110546-25110833,25110930-25110993,
25111855-25111912,25111913-25112168,25112310-25112532,
25112614-25112742,25113651-25113856
Length = 651
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 368 KKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIGNHLMIRKLSMMNI 216
++++G PR + ++ E +K KK+ +S++ D NH +K S I
Sbjct: 576 RRSRGRPRSTRLMSKGETSSKAKKKKASESTS-KDESKNHAKGKKESTKQI 625
>05_05_0179 +
23022985-23023190,23024099-23024227,23024309-23024531,
23024674-23024929,23025455-23025912,23026009-23026296,
23026369-23027100
Length = 763
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 368 KKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIGNHLMIRKLSMMNI 216
++++G PR + ++ E +K KK+ +S++ D NH +K S I
Sbjct: 688 RRSRGRPRSTRLMSKGETSSKAKKKKASESTS-KDESKNHAKGKKESTKQI 737
>03_02_0226 -
6569657-6570388,6570461-6570748,6570846-6571303,
6571694-6571828,6571829-6572084,6572229-6572451,
6572533-6572661,6573570-6573775
Length = 808
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 368 KKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIGNHLMIRKLSMMNI 216
++++G PR + ++ E +K KK+ +S++ D NH +K S I
Sbjct: 733 RRSRGRPRSTRLMSKGETSSKAKKKKASESTS-KDESKNHAKGKKESTKQI 782
>01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022
Length = 342
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 368 KKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADSIGNHLMIRKLSMMNI 216
++++G PR + ++ E +K KK+ +S++ D NH +K S I
Sbjct: 253 RRSRGRPRSTRLMSKGETSSKAKKKKASESTS-KDESKNHAKGKKESTKQI 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,699
Number of Sequences: 37544
Number of extensions: 277016
Number of successful extensions: 912
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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