Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1825
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.4  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    26   7.2  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 309 LIVFMALFQRYDKLEHKKMYRFVASF*PVKTELRVMI*KK 428
           ++VF+   Q  ++L      RFV SF P+K+  R+++ +K
Sbjct: 627 ILVFLTGQQEVEQLCQMLRKRFVRSFRPLKSRARIVVSRK 666


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 595 FMATQTKSVDSKFQYLKKKLIFYRSKFE 678
           ++  +++ ++ +  +LKKK   Y+SKFE
Sbjct: 123 YLYEKSRKLEEEMAHLKKKCNVYKSKFE 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,396
Number of Sequences: 5004
Number of extensions: 56114
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)