Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1825
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0911 + 25889333-25889597,25891464-25892038,25892201-258925...    30   2.5  
11_06_0248 + 21680237-21680392,21680450-21681141,21681397-216817...    29   5.8  
02_01_0244 + 1603381-1603792,1604054-1604132,1604993-1605862,160...    29   5.8  
07_03_0473 - 18525712-18525858,18526049-18526162,18526442-185265...    28   7.6  

>06_03_0911 +
           25889333-25889597,25891464-25892038,25892201-25892580,
           25892667-25892753,25892812-25893181,25893352-25893762,
           25893845-25893904,25894013-25894219
          Length = 784

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 439 ILGIFFYIITLNSVLTG*KLATKRYIFLCSSLSYLWNNAMKTIKKTFYHH 290
           I+GIFF + TL+ +L G  ++  +     S+    W+NA K I+     H
Sbjct: 673 IVGIFFGVETLSGLLAGALVSGVQIAISASNTGGAWDNAKKYIEAGASEH 722


>11_06_0248 +
           21680237-21680392,21680450-21681141,21681397-21681724,
           21681945-21682801,21682928-21683378,21683761-21684066,
           21684136-21684456,21684539-21684745,21685568-21685810
          Length = 1186

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 382 LATKRYIFLCSSL--SYLWNNAMKTIKKTFYHHI 287
           L  KRY  +   +  SY+WN   +T+ K FY  I
Sbjct: 279 LNDKRYFIVIDGVWSSYIWNTINQTLPKNFYSRI 312


>02_01_0244 +
           1603381-1603792,1604054-1604132,1604993-1605862,
           1606019-1606276,1606675-1606834
          Length = 592

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 548 NSSNVSKGQLEISTRLSTTKQFNMTK 471
           N SNV  G LE+  +L T + + +TK
Sbjct: 359 NPSNVPSGNLEMQAKLDTQRDYKLTK 384


>07_03_0473 -
           18525712-18525858,18526049-18526162,18526442-18526522,
           18526787-18526865,18526902-18526996,18527092-18527170,
           18527339-18527450,18527682-18527770,18527868-18527938,
           18528846-18528962
          Length = 327

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -2

Query: 680 YSNLER*KISFFFKY*NLESTLLVCVAIKLVQFTSATSI 564
           Y NL +  + + F +  L++ L+V +AIK+ QF ++  +
Sbjct: 196 YDNLAQNSLPYNFSWIKLKAPLVVALAIKIHQFVASVPV 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,141
Number of Sequences: 37544
Number of extensions: 272474
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)