Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1825
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016654-5|AAB66027.1|  348|Caenorhabditis elegans Hypothetical ...    32   0.56 
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>AF016654-5|AAB66027.1|  348|Caenorhabditis elegans Hypothetical
           protein C17A2.3 protein.
          Length = 348

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = +1

Query: 487 CFVVDNLVLISN*PFETFDELKTLVSIDVALVNCTSFMATQTKSVDSKFQYLKKKLIFYR 666
           CF+    +L     F+  D +  L    VAL+N  SF   +   + ++       ++ Y+
Sbjct: 12  CFIFSQQLLSKRHGFDRIDRIALLAVFVVALINYISFPERRKFQIPAELYAYSPAILPYK 71

Query: 667 SKFEYPNSSITLLLQ 711
            +F +P   + +L+Q
Sbjct: 72  -EFFFPTRDVQILIQ 85


>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
           protein C56E6.6 protein.
          Length = 1102

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 490 FVVDNLVLISN*PFETFDELKTLVSIDVALVNCTSFMATQTKSVDSKFQYL 642
           F+V    L++  P+   ++LKTL SID+   N T  M T   + +S+ + +
Sbjct: 100 FLVLRNNLLTQIPYVALNDLKTLQSIDLEGNNITHLMDTNEVTFESEMKVI 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,519
Number of Sequences: 27780
Number of extensions: 300951
Number of successful extensions: 648
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)