Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1824
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    27   2.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.5  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   9.5  

>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 223 KTTFESSINVAIHCAEDRSEWRNKLKCSVKVTTFRTEEYDARRRRLRDELV 71
           K+  E +   A+ C + + +W + L+  V+      E   A+   LR+E+V
Sbjct: 476 KSFLERNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSALREEIV 526


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -2

Query: 164  MEEQTKVLSKGHDLQN*GIRRTEEKAKRRTSMMEL 60
            + + TK+L+    ++    R +EEK++R +S+ME+
Sbjct: 1053 LTKATKILNSASSIEQ--SRNSEEKSRRDSSLMEM 1085


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 405 FWFDNDDMHFRKRERAQPLD 346
           FW + +D+H+R     QPLD
Sbjct: 265 FWAEVNDLHYRPLLSLQPLD 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,381
Number of Sequences: 5004
Number of extensions: 50888
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)