Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1824
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 31 1.4
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 29 4.3
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 29 5.7
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 28 7.5
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 28 9.9
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 28 9.9
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 28 9.9
>03_06_0252 - 32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 318 KRATISKDFSSPAKWKERGLGGVVPCAGPIRLRRLSNPASMSLSTARRTEVNG 160
+RA + + F++ ++WK+RG+ VP +RLR S+ + EV G
Sbjct: 1016 QRAAVVEHFNAGSRWKKRGI-SCVPITYDVRLRPSPGKVSIMNDGSIAVEVGG 1067
>03_06_0253 - 32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -1
Query: 318 KRATISKDFSSPAKWKERGLGGVVPCAGPIRLRRLSNPASMSLSTARRTEVNG 160
+RA + + F++ +WK+RG+ VP +RLR S+ + EV G
Sbjct: 1015 QRAAMVEHFNAGNRWKKRGI-SCVPITYDVRLRPTPGKVSIMNDGSIAVEVGG 1066
>06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +2
Query: 164 FTSVLRAVDSDIDAGFESRLNLIGPAHGTTPPRPLSFHFAGDEKSFEIVALFPLSLI*RH 343
FT V +A++ + G +S IG HG PP + F E + +SL+ H
Sbjct: 1257 FTDVAQALEFIDETGIDSLAVCIGNVHGKYPPSGPNLRFDLLEDLRALTMKKGVSLV-LH 1315
Query: 344 MSRGCARSRLRKCIS 388
+ G +++CI+
Sbjct: 1316 GASGLPHELVKECIA 1330
>07_01_1149 + 10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 318 KRATISKDFSSPAKWKERGLGGVVPCAGPIRLRRLSNPASMSLSTARRTEVNG 160
KRA K F+S KW++RG+ VP +R+R S+ + EV G
Sbjct: 965 KRAESIKKFNSCNKWRKRGISS-VPLILKVRVRPAPGRVSVLSDGSIVIEVGG 1016
>10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 318 KRATISKDFSSPAKWKERGLGGVVPCAGPIRLRRLSNPASMSLSTARRTEVNG 160
+RA + + F+ ++WK+RG+ VP + LR S+ + EV G
Sbjct: 1011 RRAAMVEQFNGSSRWKKRGI-SCVPITYSVTLRPSPGKVSILNDGSIAVEVGG 1062
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = -3
Query: 196 VAIHCAEDRSEWRNKLKC----SVKVTTFRTEEYDARRRRLRDELV--*WNYWIFFSGFL 35
+A+ C E+RS+ NK+K K+ E+ + +++R + V W I F
Sbjct: 420 IAVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFH 479
Query: 34 PFKILQ 17
P+K+++
Sbjct: 480 PYKLVK 485
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 167 TSVLRAVDSDIDAGFESRLNLIGPAHGTTPPRPLSFHFAGDEK 295
+++ +A + + AGF +L PA GTT PR F D +
Sbjct: 1285 SALTQAAFTTLPAGFPVESDLWEPAQGTTLPRQSEFSLLTDHR 1327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,776,254
Number of Sequences: 37544
Number of extensions: 325863
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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