Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1824
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03717-1|AAA18955.1|  730|Drosophila melanogaster fog protein pr...    29   9.8  
AY095205-1|AAM12298.1|  730|Drosophila melanogaster SD02223p pro...    29   9.8  
AE014298-3212|ABC67195.1|  730|Drosophila melanogaster CG9559-PB...    29   9.8  
AE014298-3211|AAF50935.1|  730|Drosophila melanogaster CG9559-PA...    29   9.8  

>U03717-1|AAA18955.1|  730|Drosophila melanogaster fog protein
           protein.
          Length = 730

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 212 ESRLNLIGPAHGTTPPRPL-SFHFAGDEKSFEIVALFPLSLI*RHMSRG 355
           +  L L G ++G+ PP P+  + +  DE+S EIV  + LS+I   M  G
Sbjct: 95  KQELILAGGSNGSPPPPPIGDYDYGDDEESEEIV--YDLSVIPTAMQDG 141


>AY095205-1|AAM12298.1|  730|Drosophila melanogaster SD02223p
           protein.
          Length = 730

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 212 ESRLNLIGPAHGTTPPRPL-SFHFAGDEKSFEIVALFPLSLI*RHMSRG 355
           +  L L G ++G+ PP P+  + +  DE+S EIV  + LS+I   M  G
Sbjct: 95  KQELILAGGSNGSPPPPPIGDYDYGDDEESEEIV--YDLSVIPTAMQDG 141


>AE014298-3212|ABC67195.1|  730|Drosophila melanogaster CG9559-PB,
           isoform B protein.
          Length = 730

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 212 ESRLNLIGPAHGTTPPRPL-SFHFAGDEKSFEIVALFPLSLI*RHMSRG 355
           +  L L G ++G+ PP P+  + +  DE+S EIV  + LS+I   M  G
Sbjct: 95  KQELILAGGSNGSPPPPPIGDYDYGDDEESEEIV--YDLSVIPTAMQDG 141


>AE014298-3211|AAF50935.1|  730|Drosophila melanogaster CG9559-PA,
           isoform A protein.
          Length = 730

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 212 ESRLNLIGPAHGTTPPRPL-SFHFAGDEKSFEIVALFPLSLI*RHMSRG 355
           +  L L G ++G+ PP P+  + +  DE+S EIV  + LS+I   M  G
Sbjct: 95  KQELILAGGSNGSPPPPPIGDYDYGDDEESEEIV--YDLSVIPTAMQDG 141


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,527,365
Number of Sequences: 53049
Number of extensions: 535368
Number of successful extensions: 1281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)