Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1824
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 33 0.31
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 33 0.31
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 31 0.73
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 31 0.73
Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical pr... 31 1.3
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 30 2.2
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 30 2.2
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 30 2.2
AY305834-1|AAR11979.1| 327|Caenorhabditis elegans nuclear recep... 30 2.2
AF083228-1|AAD03686.1| 415|Caenorhabditis elegans nuclear recep... 30 2.2
AC006810-4|AAT68890.1| 425|Caenorhabditis elegans Nuclear hormo... 30 2.2
AC006810-3|AAF59634.2| 414|Caenorhabditis elegans Nuclear hormo... 30 2.2
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 29 2.9
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 28 6.8
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical protein
F20B4.7 protein.
Length = 891
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = -3
Query: 322 RKKGDNLERLLITGKVEG-KRPRGRSPMRWSDQIK---TTFESSINVAI---HCAEDRSE 164
R+K L+ + G KRP GR PMRW+D ++ TT ++ V A+DR E
Sbjct: 820 RRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKE 879
Query: 163 W 161
W
Sbjct: 880 W 880
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = -3
Query: 322 RKKGDNLERLLITGKVEG-KRPRGRSPMRWSDQIK---TTFESSINVAI---HCAEDRSE 164
R+K L+ + G KRP GR PMRW+D ++ TT ++ V A+DR E
Sbjct: 346 RRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKE 405
Query: 163 W 161
W
Sbjct: 406 W 406
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 31.5 bits (68), Expect = 0.73
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = -3
Query: 322 RKKGDNLERLLITGKVEG-KRPRGRSPMRWSDQIK---TTFESSINVAI---HCAEDRSE 164
R+K L+ + G KRP GR PMRW+D ++ TT ++ V A+DR +
Sbjct: 995 RRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQ 1054
Query: 163 W 161
W
Sbjct: 1055 W 1055
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 31.5 bits (68), Expect = 0.73
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = -3
Query: 322 RKKGDNLERLLITGKVEG-KRPRGRSPMRWSDQIK---TTFESSINVAI---HCAEDRSE 164
R+K L+ + G KRP GR PMRW+D ++ TT ++ V A+DR +
Sbjct: 734 RRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQ 793
Query: 163 W 161
W
Sbjct: 794 W 794
>Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical
protein C07A9.10 protein.
Length = 254
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = -3
Query: 268 KRPRGRSPMRWSDQIK---TTFESSINVAIHC---AEDRSEWR 158
KRP G+ PMRW+D ++ TT + N+ A+DR W+
Sbjct: 14 KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWK 56
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -2
Query: 323 EEKGRQSRKTSHHRQSGRKEA*GA*SHALV--RSD*DDFRIQHQCRYPLRGGQK*MEEQT 150
++K +S+KT H K + S L+ + + F ++ +Y ++G + + QT
Sbjct: 754 KKKKLRSKKTREHELRFLKNSGNQASPLLMDCSTQYEIFTVESGSQYDVKGRSR--KCQT 811
Query: 149 KVLSKGHDLQN*GIRRTEEKAKRRTSMM 66
K+ S H+ Q GIR T +K +RR S M
Sbjct: 812 KLSSINHE-QLQGIRETVQKLRRRESEM 838
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -2
Query: 323 EEKGRQSRKTSHHRQSGRKEA*GA*SHALV--RSD*DDFRIQHQCRYPLRGGQK*MEEQT 150
++K +S+KT H K + S L+ + + F ++ +Y ++G + + QT
Sbjct: 754 KKKKLRSKKTREHELRFLKNSGNQASPLLMDCSTQYEIFTVESGSQYDVKGRSR--KCQT 811
Query: 149 KVLSKGHDLQN*GIRRTEEKAKRRTSMM 66
K+ S H+ Q GIR T +K +RR S M
Sbjct: 812 KLSSINHE-QLQGIRETVQKLRRRESEM 838
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -2
Query: 323 EEKGRQSRKTSHHRQSGRKEA*GA*SHALV--RSD*DDFRIQHQCRYPLRGGQK*MEEQT 150
++K +S+KT H K + S L+ + + F ++ +Y ++G + + QT
Sbjct: 754 KKKKLRSKKTREHELRFLKNSGNQASPLLMDCSTQYEIFTVESGSQYDVKGRSR--KCQT 811
Query: 149 KVLSKGHDLQN*GIRRTEEKAKRRTSMM 66
K+ S H+ Q GIR T +K +RR S M
Sbjct: 812 KLSSINHE-QLQGIRETVQKLRRRESEM 838
>AY305834-1|AAR11979.1| 327|Caenorhabditis elegans nuclear receptor
NHR-13 protein.
Length = 327
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 695 ESTTGSETRPTEKIRRETQWAVSRVIKLYAKM 790
EST G + P+E + E Q V++ +KL A M
Sbjct: 44 ESTPGPSSEPSENVSAENQETVTKFLKLEASM 75
>AF083228-1|AAD03686.1| 415|Caenorhabditis elegans nuclear receptor
NHR-13 protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 695 ESTTGSETRPTEKIRRETQWAVSRVIKLYAKM 790
EST G + P+E + E Q V++ +KL A M
Sbjct: 132 ESTPGPSSEPSENVSAENQETVTKFLKLEASM 163
>AC006810-4|AAT68890.1| 425|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 13, isoform b protein.
Length = 425
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 695 ESTTGSETRPTEKIRRETQWAVSRVIKLYAKM 790
EST G + P+E + E Q V++ +KL A M
Sbjct: 131 ESTPGPSSEPSENVSAENQETVTKFLKLEASM 162
>AC006810-3|AAF59634.2| 414|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 13, isoform a protein.
Length = 414
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 695 ESTTGSETRPTEKIRRETQWAVSRVIKLYAKM 790
EST G + P+E + E Q V++ +KL A M
Sbjct: 131 ESTPGPSSEPSENVSAENQETVTKFLKLEASM 162
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 268 KRPRGRSPMRWSDQIK 221
KRP GR PMRW+D ++
Sbjct: 150 KRPVGRPPMRWNDSLR 165
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -3
Query: 286 TGKVEGKRPRGRSPMRWSDQIKTTFESSINVAIHC-----AEDRSEWRNKLKCSVKVTTF 122
+ K++G PR RSP R + ++I+ ++H RS+ R +L+ +
Sbjct: 9 SSKIDGAAPRSRSPHRRQPHHSRSSSNNISSSLHSRLRRRRRSRSQ-RKQLQWQQQQLRL 67
Query: 121 RTEEYDARRRR 89
R E+ + RRR
Sbjct: 68 RKEQQNQSRRR 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,786
Number of Sequences: 27780
Number of extensions: 285104
Number of successful extensions: 627
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -