Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1824
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    26   0.47 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    26   0.47 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   7.6  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 265 RPRGRSPMRWSDQIKTTFESSINVAIHCAED 173
           R   R+P +W D +   F SS N  +   E+
Sbjct: 413 RDPARTPFQWDDSVSAGFSSSSNTWLRVNEN 443


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 265 RPRGRSPMRWSDQIKTTFESSINVAIHCAED 173
           R   R+P +W D +   F SS N  +   E+
Sbjct: 413 RDPARTPFQWDDSVSAGFSSSSNTWLRVNEN 443


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 692 AESTTGSETRPTEKIRRETQ 751
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 442 TFSYSSQPY 468
           TF YSSQPY
Sbjct: 588 TFKYSSQPY 596


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 442 TFSYSSQPY 468
           TF YSSQPY
Sbjct: 588 TFKYSSQPY 596


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 341 HMSRGCARSRLRKCIS 388
           +M R C   RL+KC++
Sbjct: 234 YMRRKCQECRLKKCLT 249


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 341 HMSRGCARSRLRKCIS 388
           +M R C   RL+KC++
Sbjct: 31  YMRRKCQECRLKKCLT 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,538
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)