Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1823X
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553...    27   6.9  
03_01_0398 + 3092577-3093857                                           27   9.1  

>05_02_0004 -
           5528713-5528718,5529039-5529390,5529802-5530339,
           5530354-5531731,5531895-5532015,5534226-5534545
          Length = 904

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -3

Query: 352 CLLYPYSCYSSHYSRYKTKIYFF------ITRNTMPSHYFKILNHTMI 227
           C  +  S + + Y R    IY        +TRNT+P  +F IL+  MI
Sbjct: 748 CSSHSVSAFLAQYERIAETIYECFKEQESLTRNTVPDTWFNILSQKMI 795


>03_01_0398 + 3092577-3093857
          Length = 426

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 260 PLLQDTESHYDIISFYNTQTIF*LYSLGI 174
           P++ D ++H D  S YNT   F +Y  G+
Sbjct: 285 PVMLDYKTHADNASLYNTPPCFAIYICGL 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,243,511
Number of Sequences: 37544
Number of extensions: 193891
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)