Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1823X
(522 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 25 0.62
AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. 23 1.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.7
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 21 7.7
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 24.6 bits (51), Expect = 0.62
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 328 YSSHYSRYKTKIYFFITRNTMPSHYFKILNHTMISY 221
YS++ ++ I F R T H +++ NH +ISY
Sbjct: 159 YSTNKGNIRSAITIFPQR-TDGKHDYRVWNHQLISY 193
>AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein.
Length = 247
Score = 23.0 bits (47), Expect = 1.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 360 SVFAFFIHIRAIAHTIPDIKLKYIFLL 280
SV + IH++ I T P + + YI+ L
Sbjct: 103 SVTKYLIHLKEIEDTEPILLIAYIYHL 129
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 517 MIIDPQCLILQDLPLVLITMI 455
M++D CLI+ L VL T++
Sbjct: 430 MVVDRLCLIVFTLFTVLATIV 450
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 517 MIIDPQCLILQDLPLVLITMI 455
M++D CLI+ L VL T++
Sbjct: 430 MVVDRLCLIVFTLFTVLATIV 450
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 517 MIIDPQCLILQDLPLVLITMI 455
M++D CLI+ L VL T++
Sbjct: 430 MVVDRLCLIVFTLFTVLATIV 450
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 517 MIIDPQCLILQDLPLVLITMI 455
M++D CLI+ L VL T++
Sbjct: 430 MVVDRLCLIVFTLFTVLATIV 450
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 517 MIIDPQCLILQDLPLVLITMI 455
M++D CLI+ L VL T++
Sbjct: 430 MVVDRLCLIVFTLFTVLATIV 450
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 517 MIIDPQCLILQDLPLVLITMI 455
M++D CLI+ L VL T++
Sbjct: 430 MVVDRLCLIVFTLFTVLATIV 450
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 517 MIIDPQCLILQDLPLVLITMI 455
M++D CLI+ L VL T++
Sbjct: 498 MVVDRLCLIVFTLFTVLATIV 518
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 517 MIIDPQCLILQDLPLVLITMI 455
M++D CLI+ L VL T++
Sbjct: 498 MVVDRLCLIVFTLFTVLATIV 518
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 21.0 bits (42), Expect = 7.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2
Query: 284 YYAKHNAQPLLQ 249
YY+KHN Q Q
Sbjct: 386 YYSKHNTQQFTQ 397
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,588
Number of Sequences: 438
Number of extensions: 2867
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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