Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1821
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   5.0  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   6.6  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   8.7  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    25   8.7  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +2

Query: 425 MRHVPFSKLHIQILAVDGSDQVCVLVLNRFISYYT*QFILHRICYQFISLRRFRQFYLVI 604
           M +  F   +I ++ +  SD   +++ N + +      +L   CY F+SL     F++  
Sbjct: 683 MIYFVFCVFYISLIPLHNSDNSEIVLGNNYFTTLIFSSLLILACYAFVSLICMDPFFIFT 742

Query: 605 RFISPIL 625
             +  IL
Sbjct: 743 CIVQYIL 749


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 227 LFEIAYSIVYQGKKIVFFFPISEFLNLFGERRLRFAVIVHVYR--LLTEW 84
           LFE+ YS  +   +++FF  +  F  L+GE  +R   ++   R   L+ W
Sbjct: 358 LFEVRYSGSWHFFELLFFCFLGIFGGLYGEFVMRLFFLIQKLRKKYLSRW 407


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 377 YTNFIIIPVIFNC*LTLKYISKVNILNFTL 288
           Y  FI++P+IF+  ++LKY  +  I + TL
Sbjct: 485 YPTFILLPIIFSM-ISLKYRLRQFIYSITL 513


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 464 IFEYAISKRAHVAYFVKYIFHIHVV 390
           +F+Y +S+     YFV  I+ IH++
Sbjct: 293 LFDYVVSQVVKYPYFVTDIYQIHLL 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,957
Number of Sequences: 5004
Number of extensions: 65378
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)