Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1821
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595...    29   3.0  
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541...    25   4.4  

>02_05_0144 +
           26258841-26258948,26259099-26259212,26259335-26259556,
           26259660-26259734,26259827-26259943,26260046-26260296,
           26260833-26260908,26261045-26261131,26261216-26261401
          Length = 411

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 399 YMKNVFDEICDMCPFRNC 452
           YMKN F  I DMC  +NC
Sbjct: 369 YMKNAFQNIKDMCKSQNC 386


>08_02_1498 +
           27553449-27553730,27553834-27553946,27554063-27554129,
           27554310-27554402,27554516-27554659,27554860-27554954,
           27555120-27555412,27555514-27555632,27555742-27556094,
           27556177-27556286,27556403-27556512,27556802-27557671
          Length = 882

 Score = 24.6 bits (51), Expect(2) = 4.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 351 YWNYYKIGVGKPQNYMY 401
           YW  Y   +GKP  Y+Y
Sbjct: 697 YWVSYHHALGKPSQYLY 713



 Score = 22.6 bits (46), Expect(2) = 4.4
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +3

Query: 378 GKPQNYMYMKNVFDEICDMCPFRNCIFKYWQW 473
           GKP   M +    D IC     +N     W W
Sbjct: 735 GKPDAIMILTVKRDNICTFMTEKNPAHVRWSW 766


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,156,977
Number of Sequences: 37544
Number of extensions: 321189
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)