Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1821
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical ...    34   0.12 
AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical ...    34   0.12 
AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    30   1.5  
Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z69718-3|CAA93538.1|  365|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    28   8.1  

>AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4a protein.
          Length = 407

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 390 NYMYMKNVFDEICDMCPFRNCIFKYWQWMVVTKSAYWYSIVLYPIIHNN-LYFTESVTSL 566
           N  +++ VF++I D C +   IF   +W +V        + L  I+HN+ L++T S +++
Sbjct: 5   NISFVEEVFEDIEDECAYSPPIF--LEWKMVFVGVIGLIVALISIVHNSLLFYTFSTSTV 62

Query: 567 FR 572
            R
Sbjct: 63  LR 64


>AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4b protein.
          Length = 441

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 390 NYMYMKNVFDEICDMCPFRNCIFKYWQWMVVTKSAYWYSIVLYPIIHNN-LYFTESVTSL 566
           N  +++ VF++I D C +   IF   +W +V        + L  I+HN+ L++T S +++
Sbjct: 5   NISFVEEVFEDIEDECAYSPPIF--LEWKMVFVGVIGLIVALISIVHNSLLFYTFSTSTV 62

Query: 567 FR 572
            R
Sbjct: 63  LR 64


>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 503 VPVRRLGHYHPLPIFEYAISKRAHVAYFV-KYIFHIHVVLRLTYTNFIIIPVIFNC 339
           +P    GHY  L  F  +++   HVA+ +   +F I  ++   YT    I +  NC
Sbjct: 69  LPPMIAGHYKGLITFYLSVNAYHHVAFGISSTVFQIEALVYCFYTKHQSISIFMNC 124


>Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical
           protein T08G3.12 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = -1

Query: 571 RNKLVTDSVKYKLLCIIGYKTIEYQYADLVTTIHCQYLNMQFRKGHMSHISSNTFFIYM 395
           ++K++++S K     +     I+     +   I C YLN      H+  I +NT  I++
Sbjct: 224 KSKIISESTKRLQKQLFKALCIQVTIPTIAIFIPCVYLNTSAALDHLDMIENNTAIIFL 282


>Z69718-3|CAA93538.1|  365|Caenorhabditis elegans Hypothetical
           protein W06D11.4 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 281 KINQFFKFPNILHFQRCA--LFEIAYSIVYQGKKI 183
           K N  FKFPN LHF++    +FE  Y  +    K+
Sbjct: 54  KGNAEFKFPNTLHFRQTVKEMFEEIYKPILDAVKV 88


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 507  IVLYPIIHNNLYFTES 554
            ++ Y  +HNN+YFTES
Sbjct: 1377 LITYDFMHNNVYFTES 1392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,538,553
Number of Sequences: 27780
Number of extensions: 355389
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)