Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1821
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.57 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 458 EYAISKRAHVAYFVKYIFHIHVVLRLTYTNFIIIPVIFNC 339
           EY+   R H   F     H H+ L + Y+  +I+ ++ NC
Sbjct: 37  EYSDLVRPHWRAFPAPGKHFHIGLAIIYSMLLIMSLVGNC 76


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 404 HIHVVLRLTYTNFIIIPVIFNC 339
           H H+ L + Y+  +I+ ++ NC
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNC 76


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 339 AIENYWNYYKIGVGKPQNYMYM 404
           ++EN   YY++G   P N+ ++
Sbjct: 303 SLENTLKYYEVGSNVPFNFKFI 324


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 360 YYKIGVGKPQNYMYMKNV 413
           YY  G   P N+ ++KNV
Sbjct: 297 YYDYGADFPFNFAFIKNV 314


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 360 YYKIGVGKPQNYMYMKNV 413
           YY  G   P N+ ++KNV
Sbjct: 297 YYDYGADFPFNFAFIKNV 314


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 736 ILKSREDDAILRLLSYS*TQDDKNDRHLRLFKVTLVLQNWR 614
           IL  R  D     +  S   D  +DR LRL    + + NW+
Sbjct: 277 ILTERPSDRQRNEILLSDELDSVDDRTLRLKGQMIYMDNWK 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,278
Number of Sequences: 438
Number of extensions: 4605
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)