Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1820
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.7  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    27   3.0  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   5.2  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    26   5.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.2  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    26   6.8  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   6.8  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 288 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 383
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -1

Query: 144 FHYFGKHSGCEVI-----VSNFEHIREICDGCHCRDGDSKQTNDCLH 19
           F  FG+H  CEV+     VSNF    EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHF--EIYQG-HRNDSDESENVVFLH 102


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 3   DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQNW 101
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 530 LSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYGESAXL 709
           + +AT  V   A Y K    +  D   +S   FY  K++  K+   ++R +  +  SA +
Sbjct: 136 VDTATKPVRETAFY-KTIKQTMSDGSTSSRYGFYADKEQRKKLREEFERRNRMFASSARI 194

Query: 710 MPN 718
            PN
Sbjct: 195 QPN 197


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 652
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 699 LSPYL*SPRLYIMGTLIVLSLLT*KSRSLVSRSS 598
           L   L SP LY+   ++   L T  SRSLV+RS+
Sbjct: 73  LDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSA 106


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  LFTIAIAAMAAVTNL-SNVLKIGNDNFTARMFTEVVKNN 150
           LFT A+  +   TN+ SN +KIGN N T R+  +  KN+
Sbjct: 11  LFT-AMFDLDKNTNIESNHVKIGNKNTTRRLIIKSSKNS 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,469
Number of Sequences: 5004
Number of extensions: 59201
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)