Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1820
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.77 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.5  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 467 RLSCDCILREINVLD 423
           +L C+CIL+  N+LD
Sbjct: 60  QLYCECILKNFNILD 74


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 178 MPRGQRFSLDYFSLLR 131
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 178 MPRGQRFSLDYFSLLR 131
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 399 SRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKI*LIRTRSAQPQRLFSSTPS-IS 575
           S ++  +  QNID +KNT+     ND +  N   R         + Q  R++ S P+ I 
Sbjct: 410 SMEINQNIAQNIDHAKNTIIDYRNND-LSINEEKR------TIENEQLNRMYKSYPNYID 462

Query: 576 REHGVLNL 599
           +E   +NL
Sbjct: 463 KETKDMNL 470


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 611 TSDRD--FYVSKDKTIKVPMMYKRGDYKYGESAXLMP 715
           TS RD  FY+   K +   + YK+   +Y +S   MP
Sbjct: 413 TSMRDPAFYMLYQKILSYFLRYKKLQPQYSQSELQMP 449


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +2

Query: 569 YFKGAWSSKFDERLTSDRDFYVSKDKTIKVP 661
           +F+ +++++  +RLTS  + +V   K +++P
Sbjct: 78  HFESSFNAQSWQRLTSLHELHVHGCKVLRIP 108


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 710 LSXRSLHIYNRRVYTSWV 657
           L  R++H Y+  V+ SW+
Sbjct: 460 LQTRTMHPYDHLVWNSWM 477


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 151 PGKSVVLSAFSVLPPLAQLALASDGET 231
           P K +   AF   PPL + A+    +T
Sbjct: 406 PSKPMCAEAFQEFPPLGRFAVRDMRQT 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,277
Number of Sequences: 438
Number of extensions: 4184
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)