Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1819X
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    28   0.39 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   0.69 
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   1.2  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   3.7  
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    25   3.7  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   3.7  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    25   3.7  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    24   6.4  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    23   8.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    23   8.5  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    23   8.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    23   8.5  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    23   8.5  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.9 bits (59), Expect = 0.39
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 197 KEIYKYQAPWPLYSLNW-SVNLHKSFRLALGSFVDVYNNKV 316
           KE   Y APW  ++L+W     + S  +A+GS  +  NN +
Sbjct: 42  KEYTGYNAPWIPFALDWLKQGKYSSEWIAMGSLNEEPNNMI 82


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 117  ISQNGHQAALLCLI*IYLFKY*TVHELL 34
            I QNG + AL CL  I+ F+  TV +L+
Sbjct: 1086 IDQNGFEDALRCLYGIHAFRLYTVEKLV 1113


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 132 IKHYH*CRCHTAVRVPVQARYAKKYTNTKRHGHY 233
           ++H H CRCHT +     + Y  + +   + GHY
Sbjct: 67  VRHIHCCRCHTYIGWKYVSSY--EPSQKFKDGHY 98


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 206 YKYQAPWPLYSLNW 247
           YKYQ+P  +YS +W
Sbjct: 96  YKYQSPETVYSYSW 109


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +1

Query: 115 YYGKETLNIITDVDATQQFEYQ 180
           Y+G +T++  TD+  T+  +++
Sbjct: 133 YFGPQTMSFTTDITVTESMQFE 154


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 249 DQFNEYNGHGAWYLYISLRIVPELVL 172
           DQ  +  GH AW   ++   V +L+L
Sbjct: 220 DQVGQLRGHAAWIFAVAFNPVGDLLL 245


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 312 LLLYTSTKLPRANLKLLCRLTDQFNEYNGHGAWYL 208
           L L    K P    + +  LTDQFN+ +  G  YL
Sbjct: 2   LALKLQKKYPELTNEEILTLTDQFNKLDVDGKGYL 36


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 63  IGIFKSNITKPLGGHSVILRQRNIKHYH*CR----CHTAVRVPVQARYAKKYTNTK 218
           I +FK  I++ L   S   RQ+ ++    CR      T  R   +  +AK++  TK
Sbjct: 27  IPLFKKKISQALKKASTFERQKLVRRIKNCRASEDADTLGRFEAEFEFAKQFDFTK 82


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 136 NIITDVDATQQFEYQFRHDTQRNIQIPSAMAIILIEL 246
           ++I DV+++Q    + R+D + N  I S+   +L +L
Sbjct: 553 DLINDVESSQSSLDKLRNDAEENRNILSSKLKVLSDL 589


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +1

Query: 118 YGKETLNIITDVDATQQFEYQFRHDTQRNIQIPSAMAI--------ILIELVCQPAQEFQ 273
           +G  TLNI+  +  +  +     H     I+IP +++I        +L+ L+  P   F+
Sbjct: 655 FGGPTLNILIGIGISSFYSSISNHGNDSVIEIPHSLSITAYFLLACLLLLLIYVPLNRFR 714

Query: 274 VS 279
           V+
Sbjct: 715 VN 716


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 248 TNSMSIMAMALGICIFLCVS 189
           T  +++     GICI++C++
Sbjct: 8   TEKLTLFLFIYGICIYICIA 27


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 197  CVSCLNWYSNCCVASTSVIMFNVS 126
            C +CL W+   CV  +S I+  +S
Sbjct: 1472 CHNCLEWFHYECVGLSSDIVSTLS 1495


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 246 GLSTCTRVSG*PWAVLLTCTT 308
           G++  TR +G PW  L  C+T
Sbjct: 151 GIAWHTRTTGPPWTNLNACST 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,350,870
Number of Sequences: 5004
Number of extensions: 25374
Number of successful extensions: 60
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)