Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1819X
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0044 - 19198001-19199236                                         52   1e-07
05_05_0389 + 24590331-24590529,24591068-24591392,24591519-245916...    32   0.085
09_02_0379 - 8210401-8210567,8210944-8213827                           26   5.6  
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641...    26   7.4  
04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073     26   7.4  
03_06_0137 - 31937541-31939892                                         26   7.4  
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427...    25   9.7  
04_03_0083 + 10878487-10878714,10878781-10879223,10879267-108794...    25   9.7  

>02_04_0044 - 19198001-19199236
          Length = 411

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +2

Query: 194 RKEIYKYQAPWPLYSLNWSVNLHKSFRLALGSFVDVYNNKV 316
           R EIY Y+A W +Y +NWSV   K +RLA+ S ++ +NN V
Sbjct: 33  RSEIYTYEAGWHIYGMNWSVRRDKKYRLAIASLLEQHNNHV 73


>05_05_0389 +
           24590331-24590529,24591068-24591392,24591519-24591617,
           24591861-24592006,24592519-24592574
          Length = 274

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 305 CTRQQNCPGLT*NSCAG*QTNSMSIMAMALGICIFLCVS 189
           CTR   C G       G Q +SM++ A+A  +C F C +
Sbjct: 197 CTRAATCKGCVRTWVLGRQWHSMNVEAVASALCTFTCAA 235


>09_02_0379 - 8210401-8210567,8210944-8213827
          Length = 1016

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 239  MSIMAMALGICIFLCVSCLNWYS 171
            M I ++    CIFL   CL WYS
Sbjct: 982  MGIASVIRSCCIFLIGLCLLWYS 1004


>08_01_0722 +
           6412654-6412860,6413142-6413687,6413745-6413877,
           6413917-6414035,6414128-6414883,6415209-6415258,
           6415560-6416679
          Length = 976

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 159 HTAVRVPVQARYAKKYTNTKR 221
           H+  RVP  ARY K   N KR
Sbjct: 331 HSVNRVPTYARYLKDILNNKR 351


>04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073
          Length = 391

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 127 LCRNITEWPPSGFVMFDL 74
           LCR +  +PP  F +FDL
Sbjct: 4   LCRRLWRFPPPSFELFDL 21


>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 233 IMAMALGICIFLCVSCLNWYSNCCVASTSVIMF 135
           ++ + LG C+ +  S LN Y  C  + T+  +F
Sbjct: 169 VVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 201


>07_03_1738 -
           29141829-29141989,29142112-29142343,29142751-29142792,
           29143312-29143410,29143575-29143667,29143742-29143876,
           29144251-29144290,29144475-29144844,29146575-29146650
          Length = 415

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 130 FLCRNITEWPPSGFVMFDLNIP 65
           FL + I++W PS F  FD+  P
Sbjct: 189 FLKKQISKWNPSIFQQFDMVFP 210


>04_03_0083 +
           10878487-10878714,10878781-10879223,10879267-10879423,
           10879573-10880433
          Length = 562

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 165 AVRVPVQARYAKKYTNTKR 221
           A+RVP  ARY K   N KR
Sbjct: 406 AMRVPTYARYLKDILNNKR 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,366,062
Number of Sequences: 37544
Number of extensions: 151951
Number of successful extensions: 339
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)