Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1819X
(318 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical pr... 47 3e-06
Z79756-5|CAB02115.1| 388|Caenorhabditis elegans Hypothetical pr... 32 0.078
AF040652-8|AAK84566.1| 402|Caenorhabditis elegans Hypothetical ... 27 3.9
U80931-1|AAB37998.2| 343|Caenorhabditis elegans Hypothetical pr... 26 5.1
U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched fami... 26 6.8
AF016442-2|AAB65919.1| 203|Caenorhabditis elegans Hypothetical ... 26 6.8
AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical ... 26 6.8
U53139-7|AAK18935.1| 235|Caenorhabditis elegans Hypothetical pr... 25 8.9
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 25 8.9
AF016666-4|AAB66082.1| 331|Caenorhabditis elegans Hypothetical ... 25 8.9
>Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical
protein F53C11.7 protein.
Length = 478
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +2
Query: 194 RKEIYKYQAPWPLYSLNWS--VNLHKSFRLALGSFVDVYNNKV 316
RKEIY Y AP+ L+S WS + + FRLA+ SF++ Y+NK+
Sbjct: 139 RKEIYAYNAPFTLFSHGWSAATDPSRKFRLAVSSFIEEYSNKI 181
>Z79756-5|CAB02115.1| 388|Caenorhabditis elegans Hypothetical
protein F53C11.8 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.078
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 194 RKEIYKYQAPWPLYSLNWSVNLHKSFRLALGSFVDVYNN 310
R EIYK+ + LY+ WS FRLA+G+ DV N
Sbjct: 47 RCEIYKFTSDQQLYASAWSNKNDIKFRLAVGTVSDVSVN 85
>AF040652-8|AAK84566.1| 402|Caenorhabditis elegans Hypothetical
protein T05A8.7 protein.
Length = 402
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 120 RQRNIKHYH*CRCHTAVRVPVQARYAKKYTNTKRHGH 230
RQ NI +H C + V Q RY KK TN H
Sbjct: 284 RQLNISAHHACFKNRVCDVLWQLRYVKKSTNAAVEVH 320
>U80931-1|AAB37998.2| 343|Caenorhabditis elegans Hypothetical
protein T01B11.1 protein.
Length = 343
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +3
Query: 111 VILRQRNIKHYH*CRCHTAVRVPVQARYAKKYTNTKRHGHYTH*IGLSTCTRVSG*PWAV 290
V++ NI+ H H V +Q+ + K +N +RH + ++T P+
Sbjct: 213 VVMSAENIRSEHNTLLHVNETVKIQSSQSIKQSNRRRHQAVRRCLMMATIQVSLNAPYYT 272
Query: 291 LLTCTTI 311
L C I
Sbjct: 273 LQLCDEI 279
>U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched family
protein 2 protein.
Length = 936
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = -2
Query: 251 QTNSMSIMAMALGICIFLCVSCLNWYSNCCVASTSVIMFNVSL 123
+++S + +A++LGIC+ + ++C + +SVI+F V L
Sbjct: 772 RSSSFTSVAISLGICLIVIIACTRVIKLSII--SSVIIFFVIL 812
>AF016442-2|AAB65919.1| 203|Caenorhabditis elegans Hypothetical
protein K12B6.4 protein.
Length = 203
Score = 25.8 bits (54), Expect = 6.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2
Query: 236 SIMAMALGICIFLCVSCL 183
+I+ +G+C+F C+ CL
Sbjct: 148 TIIIYVMGLCLFACICCL 165
>AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical
protein F43C11.7 protein.
Length = 295
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 270 KLLCRLTDQFNEYNGHGAWYLYISLRIVPELVLE 169
KL+CR ++F + GH L + + V + +LE
Sbjct: 116 KLMCRTCEEFGVHAGHRKGLLQVEAKKVRQNLLE 149
>U53139-7|AAK18935.1| 235|Caenorhabditis elegans Hypothetical
protein F18E3.10 protein.
Length = 235
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 212 ICIFLCVSCLNWYSN 168
+ +FL VS +NWY N
Sbjct: 176 VTVFLMVSMINWYKN 190
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 132 CFFAVISQNGHQAALLCLI*IYLFKY 55
CFF + S + A + CL+ + ++KY
Sbjct: 535 CFFIMFSTHWDYAIVACLLCLVIYKY 560
>AF016666-4|AAB66082.1| 331|Caenorhabditis elegans Hypothetical
protein B0281.3 protein.
Length = 331
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 279 ANLKLLCRLTDQFNEYNGHGAWYLYIS 199
+N KL+CR + F + GH A YL I+
Sbjct: 139 SNDKLMCRTCEDFGVHKGH-AKYLLIT 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,490,757
Number of Sequences: 27780
Number of extensions: 147146
Number of successful extensions: 295
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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