Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1817
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    29   0.049
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.60 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.4  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    23   2.4  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   4.2  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   4.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   4.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   5.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.7  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.7  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 416 PLNPKANREKMTQIMFETFNT-PAMYVAIQAVSRCTRPVVPPVS-CWTPATVSPTPCPST 589
           PL    NR    Q  +      PAM V  +   RC   VVPP   C  P+T+ P P    
Sbjct: 165 PLGKSCNRYWQCQGGYPRLQRCPAMLVFDRRSLRC---VVPPTEDCDVPSTIPPPPPEED 221

Query: 590 RDTHSP 607
            D++ P
Sbjct: 222 DDSNIP 227


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 314 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 409
           +VT+W + E+I++     +L V     PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 488 YVAIQAVSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 616
           Y     V   T  + P ++CW   +++ +P P  + +  PTPS
Sbjct: 304 YSTWSTVQTPTTVMSPTINCW---SLTSSPPPPYQISAQPTPS 343


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 186 GTRREEHHLLRNRP 145
           G R+  HHL++N+P
Sbjct: 82  GVRKVLHHLIKNKP 95


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 186 GTRREEHHLLRNRP 145
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 186 GTRREEHHLLRNRP 145
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 352 MPNLLHVIPVSDDSVFDGVFEGQDTSFALCLVSTYESF 239
           +P++  +IP  DD+  D       T+  + L++ + S+
Sbjct: 355 LPDISEIIPTGDDTTMD---SNDMTAIYVLLINIFASY 389


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 352 MPNLLHVIPVSDDSVFDGVFEGQDTSFALCLVSTYESF 239
           +P++  +IP  DD+  D       T+  + L++ + S+
Sbjct: 355 LPDISEIIPTGDDTTMD---SNDMTAIYVLLINIFASY 389


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 352 MPNLLHVIPVSDDSVFDGVFEGQDTSFALCLVSTYESF 239
           +P++  +IP  DD+  D       T+  + L++ + S+
Sbjct: 355 LPDISEIIPTGDDTTMD---SNDMTAIYVLLINIFASY 389


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 352 MPNLLHVIPVSDDSVFDGVFEGQDTSFALCLVSTYESF 239
           +P++  +IP  DD+  D       T+  + L++ + S+
Sbjct: 355 LPDISEIIPTGDDTTMD---SNDMTAIYVLLINIFASY 389


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 283 PDPQIPHRTRNRH 321
           PD  +P RT NRH
Sbjct: 110 PDNFLPERTANRH 122


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
 Frame = +3

Query: 480 PPCTSPSKPCLAVRVRSYHRYRAGL-----RRRCLPHRAHLRGIRTPPRHPASGLSRSRP 644
           PP  S ++P L       + Y   L      +    H+A +R +  PP+       RS P
Sbjct: 26  PPSLSDTRPMLPYPQNYINSYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSSP 85


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 430 GQQREDDPDHVRNIQHARHVRRHPSR 507
           GQ    DP+ V   +   H+  HP +
Sbjct: 903 GQYTTKDPNEVTCDEEEGHISYHPDK 928


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 624 QTQDGVGECVSLVDGH 577
           Q+ D +G C S+ D H
Sbjct: 652 QSDDNLGSCGSMGDAH 667


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 624 QTQDGVGECVSLVDGH 577
           Q+ D +G C S+ D H
Sbjct: 544 QSDDNLGSCGSMGDAH 559


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 480 PPCTSPSKPCLAVRVRS 530
           PPC    + C+AV V S
Sbjct: 13  PPCDDEVESCIAVGVGS 29


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 288 VRIPLLLCASSLRTSPSVPYRPSRPDG 208
           +++P    A S   SP++P+  +R DG
Sbjct: 117 MQLPHPAAAHSALLSPAMPHNLTRHDG 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,452
Number of Sequences: 336
Number of extensions: 4379
Number of successful extensions: 20
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)