Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1817
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 174 1e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 98 9e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 9e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 91 1e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 3e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 7e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 36 0.004
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.013
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.091
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 31 0.21
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 29 0.85
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.85
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 4.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.5
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 6.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.9
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 7.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 174 bits (423), Expect = 1e-44
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 436
DEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115
Query: 437 REKMTQIMFETFNTPAMYVAIQAV 508
REKMTQI+FETFN PA YVAIQAV
Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAV 139
Score = 111 bits (267), Expect = 9e-26
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = +3
Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVETRHRAK 275
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 109 bits (262), Expect = 4e-25
Identities = 50/53 (94%), Positives = 53/53 (100%)
Frame = +1
Query: 508 VSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 666
+SLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKI
Sbjct: 140 LSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKI 192
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 98.3 bits (234), Expect = 9e-22
Identities = 40/84 (47%), Positives = 63/84 (75%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 436
DEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP AN
Sbjct: 56 DEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVAN 115
Query: 437 REKMTQIMFETFNTPAMYVAIQAV 508
REKM + MFE + +YVAIQAV
Sbjct: 116 REKMCETMFERYGFGGVYVAIQAV 139
Score = 70.9 bits (166), Expect = 2e-13
Identities = 30/53 (56%), Positives = 41/53 (77%)
Frame = +1
Query: 508 VSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 666
+SLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +
Sbjct: 140 LSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISL 192
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 102 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 206
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.1 bits (226), Expect = 9e-21
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +2
Query: 287 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 466
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 467 TFNTPAMYVAIQAV 508
+FN +Y+A+QAV
Sbjct: 149 SFNCAGLYIAVQAV 162
Score = 52.4 bits (120), Expect = 6e-08
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +1
Query: 535 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 666
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSL 223
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVETR 263
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ ++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 91.1 bits (216), Expect = 1e-19
Identities = 40/84 (47%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKAN 436
EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N
Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120
Query: 437 REKMTQIMFETFNTPAMYVAIQAV 508
+EK+ + +ET N PA+ ++Q V
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPV 144
Score = 74.1 bits (174), Expect = 2e-14
Identities = 30/50 (60%), Positives = 44/50 (88%)
Frame = +1
Query: 508 VSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 657
++LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 145 LALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
Score = 61.3 bits (142), Expect = 1e-10
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +V
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFV 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +2
Query: 284 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 463
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 464 ETFNTPAMYVAIQ 502
E+ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 200
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 517 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 657
+ASG+ T ++D G S IY+G+ L +G + D L
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDIL 187
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.8 bits (136), Expect = 7e-10
Identities = 25/70 (35%), Positives = 42/70 (60%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 478
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 479 PAMYVAIQAV 508
P++ I +
Sbjct: 145 PSVAYGIDGL 154
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 209
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 34.7 bits (76), Expect = 0.013
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 532 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 666
++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +2
Query: 308 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 487
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 488 YVAIQAV 508
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 200
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +1
Query: 541 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 666
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEV 200
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.7 bits (76), Expect = 0.013
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 466
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 467 TFNTPAMYVAIQ 502
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 508 VSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 666
+ LYA G G+V+D G + PI +G + A +L L GR +T +L +
Sbjct: 186 MGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNL 238
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.091
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 359 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 502
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 331 IPVSDDSVFDGVFEGQDTSFALCLVSTYESFCPIPTITP*WRGLPTIEGNTARGASSPAK 152
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 151 PALHIP 134
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 28.7 bits (61), Expect = 0.85
Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 7/150 (4%)
Frame = +2
Query: 242 GLVRRDEAQSKRGILTLKYPIEHGI----VTNWDDMEKIWHHTFYNE--LRVAPEEHPVL 403
GL+ R+E KR L+ + P + +T W++ FY+E L++ E
Sbjct: 413 GLLLREEKIRKR--LSRELPKVQSLLIPEITAWEERNGRTF-LFYDEPLLKICQEATQPK 469
Query: 404 LTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVSRCTRPVVPPVSCWTPATVSP-TPC 580
+ ANR K TP+ R P P V + A SP TP
Sbjct: 470 SLYRSASAAANRPKTATTTDSVNRTPSQR------GRVAVPSTPSVRSASRAMTSPRTPL 523
Query: 581 PSTRDTHSPTPSCVWT*PVATSQTTS*RSH 670
P ++T +P+ S P ATS T+ R H
Sbjct: 524 PRVKNTQNPSRSISAEPPSATS--TANRRH 551
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 517 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 666
+ +G + V+D G + + EG +P++ ++++ G D+T MK+
Sbjct: 286 FGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKL 335
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -2
Query: 253 TYESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 95
T S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 256 STYESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 143
+T +SF P+PT P LPT NT + P+ PAL
Sbjct: 65 NTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 524 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 616
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 401 LLTEAPLNPKANREKMTQIMFETFN 475
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 506 VSRCTRPVVPPVSCWTPATVSPTPCPST 589
VSR T+P+ S +P VSP PST
Sbjct: 263 VSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 515 CTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTT 655
C + PV + T S TP P+T + +PTP+ T T+Q+T
Sbjct: 833 CDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST--TTTAQST 876
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 215 GRDGRYGTEGLVRRDEAQSKRGILTLK 295
GRDGRY +E L RR S + + +L+
Sbjct: 186 GRDGRYKSEDLKRRKLQPSSKPLSSLE 212
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 533 PPVSCWTPATVSPTPCPSTRDTHSP 607
PPV+C TP P C + H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 567 DTVAGVQHDTGGTTGRVQRDTAWMATYMAGV 475
D G+ D G TG + DT+WM + ++ V
Sbjct: 58 DIELGMPLDLAGITGFFEGDTSWMHSDLSSV 88
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 454 DH-VRNIQHARHVRRHPSRVSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 606
DH V+N A ++R++ + + +A G+ +G G+ H + + +GYA+P
Sbjct: 126 DHDVQNKSEA-NLRKYKN-IESFAKGQGIDFY-PAGRGIGHQIMVEQGYAMP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,850
Number of Sequences: 5004
Number of extensions: 69437
Number of successful extensions: 257
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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