Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1816
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    28   6.2  
AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine r...    28   8.1  

>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical protein
            ZK337.1c protein.
          Length = 1516

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +3

Query: 99   NTHINISLSIKYMYFLHGYQVSSQSDAWFSNYNGTSVTNHCRFIYWYRLGS*D----LCI 266
            +TH +  ++I+    L  YQ+SS +DA   N NGT V        +YR    D     C 
Sbjct: 1289 HTH-SFDINIRNAIVLQSYQLSSLNDAVSINANGTGVVFAQLSYSYYRDSLNDDAPFFCS 1347

Query: 267  YTYRIPRSLNKAELDDVSCRKYT 335
               +  R+ N+ +LD   C  YT
Sbjct: 1348 QEIKEIRAGNRLQLD--LCCNYT 1368


>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical protein
            ZK337.1b protein.
          Length = 1501

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +3

Query: 99   NTHINISLSIKYMYFLHGYQVSSQSDAWFSNYNGTSVTNHCRFIYWYRLGS*D----LCI 266
            +TH +  ++I+    L  YQ+SS +DA   N NGT V        +YR    D     C 
Sbjct: 1292 HTH-SFDINIRNAIVLQSYQLSSLNDAVSINANGTGVVFAQLSYSYYRDSLNDDAPFFCS 1350

Query: 267  YTYRIPRSLNKAELDDVSCRKYT 335
               +  R+ N+ +LD   C  YT
Sbjct: 1351 QEIKEIRAGNRLQLD--LCCNYT 1371


>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical protein
            ZK337.1a protein.
          Length = 1508

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +3

Query: 99   NTHINISLSIKYMYFLHGYQVSSQSDAWFSNYNGTSVTNHCRFIYWYRLGS*D----LCI 266
            +TH +  ++I+    L  YQ+SS +DA   N NGT V        +YR    D     C 
Sbjct: 1281 HTH-SFDINIRNAIVLQSYQLSSLNDAVSINANGTGVVFAQLSYSYYRDSLNDDAPFFCS 1339

Query: 267  YTYRIPRSLNKAELDDVSCRKYT 335
               +  R+ N+ +LD   C  YT
Sbjct: 1340 QEIKEIRAGNRLQLD--LCCNYT 1360


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
            protein Y39B6A.30 protein.
          Length = 1408

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 510  YIPLIY-FKSKSLSKIEV*NSKLKFKNT*YIIN 605
            Y PL + F SK+ +++++   ++K KNT YI+N
Sbjct: 1187 YFPLWFPFLSKTKNQLKIGRFEIKIKNTEYILN 1219


>AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine
           receptor, class x protein59 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -1

Query: 622 SNEVLTFIIYYVFLNFNFEFYTSIFESDFDLK 527
           + +++ F+I+ + L F+F FY  +   +++LK
Sbjct: 121 NTKIIIFLIFILTLGFSFSFYEVLCSLEYNLK 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,613,958
Number of Sequences: 27780
Number of extensions: 284219
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)