Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1815X
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0766 - 5928283-5929092                                           28   3.4  
12_02_0593 + 20874459-20874575,20875258-20875427,20875597-208756...    27   7.8  

>01_01_0766 - 5928283-5929092
          Length = 269

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 220 CGSVLSELFLLRLKSVQCVGGKGN 291
           C S LSE++LL+ K   C  G GN
Sbjct: 49  CASYLSEIYLLKDKLKSCALGAGN 72


>12_02_0593 +
           20874459-20874575,20875258-20875427,20875597-20875672,
           20875764-20875894,20876570-20876692,20876780-20876893,
           20877163-20877239,20877405-20877472,20877740-20877861,
           20878041-20878180,20878411-20878603,20878692-20878827
          Length = 488

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 169 LHQITIKFISLISS*VKIRRTLYLKYNELYCDDKEEIP 56
           L+ I+  F  L S   ++ RTL  +Y  L+C D + +P
Sbjct: 146 LNTISASFPGLGSLVSELHRTLIDQYGHLFCLDSKRVP 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,457,902
Number of Sequences: 37544
Number of extensions: 137418
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)