Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1814
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    50   4e-07
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    38   0.001
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    35   0.011
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    30   0.43 
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    29   0.99 
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.0  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   4.0  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   4.0  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    26   5.3  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   9.2  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.2  

>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 19/48 (39%), Positives = 31/48 (64%)
 Frame = +3

Query: 114 FIEMLPDEVLIAIFKYLPLDCLLVCENVSQRWKRLARDTAVWRCIYLR 257
           F E+ P+EV + +F YL    L  C+ +S+RWKRL  D  +W+ +Y++
Sbjct: 72  FTEVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKALYMQ 119


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 75  YSNTDWDGIGEWSFIEMLPDEVLIAIFKYLPLDCLLVCENVSQRWKRLARDTAVW 239
           ++++  D +    F+ +LP E+   I  +L    L     VS+ WK LA D  +W
Sbjct: 96  FASSTLDSLVRLDFLSLLPVEISFRILSFLDARSLCQAAQVSKHWKELADDDVIW 150


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 126 LPDEVLIAIFKYLPLDCLLVCENVSQRWKRLARDTAVWRCIY 251
           LP E+LI IF +L    LL  +   + WK+L  D   WR  +
Sbjct: 34  LPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAF 75


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 135 EVLIAIFKYLPLDCLLVCENVSQRWKRLARDTAVWRCIYL 254
           E L+ +   L    L   E VS+ W  + R ++VW  +YL
Sbjct: 17  ETLLHVLNDLSAHDLAALERVSRSWNSIVRRSSVWHNLYL 56


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = -2

Query: 417 DQEKKYYHTSPTTF*---CLNKCAYTVISNCVC 328
           DQ  +YYH +   F    C N+C  + I NC C
Sbjct: 174 DQIMRYYHATSNEFPGLWCNNECIPSSIPNCAC 206


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 219 ARDTAVWRCIYLRILQNMAKSKESQKTLQVIGTH-SECIHNLKLQYMHTYSSIRMLLEKC 395
           +++  V   +   I ++M          +++ T   +C+ +L  +Y H++ S+R  + K 
Sbjct: 477 SKNERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQSLPEKYAHSFPSVRNYIAKM 536

Query: 396 DN 401
           +N
Sbjct: 537 EN 538


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 123 MLPDEVLIAIFKYLPLDCLLVCENVSQRWKR-LARDTAVWRCI 248
           +LP EVL+ I + L    ++ C  V + W+  + ++ +++ C+
Sbjct: 138 ILPREVLLCILQQLNFKSIVQCMQVCKHWRDCIKKEPSLFCCL 180


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 462 SQHPFRILFQSDTCIDQEKKYYHTSP 385
           + HPF  L  SD  I    K YHT P
Sbjct: 315 ASHPFANLQSSDNIISFTTKRYHTRP 340


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 235 SGDVSTCGFCKTWPSPRRVRRPYKLSEHI 321
           SGD ST GF +  P+P R RRP   +  +
Sbjct: 428 SGD-STKGFAEHMPAPARRRRPQSTASFV 455


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 506 LPSDGDLIIQYDKFKGLNTLELPXFGL-SRANCNTLLD 616
           +PS G   ++YD + GLN LE+    + S+ N  +L D
Sbjct: 638 VPSLGINGLEYDNWPGLNELEMSQLDIPSQGNLKSLHD 675


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 301 YKLSEHIANAYTI*NYSICTLIQALECCWRSVIIFFLLIYA 423
           +K SEH+A   TI  +S+ T I  L   +   II F +++A
Sbjct: 452 FKRSEHLALRATIFIFSLLTFI-PLPSAYLFTIIDFFMVFA 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,906
Number of Sequences: 5004
Number of extensions: 65664
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)