Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1814
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 420 IDQEKKYYHTSPTTF*CLNKCAYTVISNCVCIRYV 316
           I++ K     SP  F   ++C   +  +C+C+R++
Sbjct: 461 IEEVKSPVLRSPPAF-SHSRCPPEIHKSCICVRFI 494


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 420 IDQEKKYYHTSPTTF*CLNKCAYTVISNCVCIRYV 316
           I++ K     SP  F   ++C   +  +C+C+R++
Sbjct: 461 IEEVKSPVLRSPPAF-SHSRCPPEIHKSCICVRFI 494


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 166 GRYLNIAIKTSSGNISMKLHSPMPSQSV 83
           G+YL+  ++ +   I  KL  P P +SV
Sbjct: 559 GKYLSGELRLNMSAIQFKLGHPEPPESV 586



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = -2

Query: 291 DSPWTWPCFAESASRYISRRRCLLRVFSIFEIHFR 187
           +S  + PC    A +Y++  +C    F+  +   R
Sbjct: 584 ESVCSLPCEVGQAKKYVAGEQCCWHCFNCTQYQIR 618


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 402 IFSLDLCMCRIEKEFERD 455
           I +L  C+  +EK +ERD
Sbjct: 432 IGTLQRCLLSLEKTYERD 449


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 402 IFSLDLCMCRIEKEFERD 455
           I +L  C+  +EK +ERD
Sbjct: 470 IGTLQRCLLSLEKTYERD 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,310
Number of Sequences: 438
Number of extensions: 4570
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)