Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1813
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    70   3e-13
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    30   0.37 
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   3.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.5  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   6.0  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    26   6.0  

>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   DEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSC 181
           DE GI R+   +H LI  E+  G+P+D++L+GGFSQG         TYP+RLAG+M  S 
Sbjct: 82  DENGILRSAGQLHELIDAELALGIPSDRILIGGFSQGCMVSLYAGLTYPKRLAGIMGHSG 141

Query: 182 WLPRHGYFPGGL-KAPVDLPIFQAHV 256
           +LP    FP  L +   ++PI   ++
Sbjct: 142 FLPLASKFPSALSRVAKEIPILLTYM 167


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 359 CASPWYVENLTFFINVLRHD 300
           C SPW  E LT  IN+LR D
Sbjct: 165 CLSPWGTERLTATINILRSD 184


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 260 RTQLYLSNGDK*RHHASRHL*KMLNFQHTKDSHIAHPLPNSKTC 391
           RT LYL +    R+H+   L + ++   +KD  +AH +    +C
Sbjct: 530 RTTLYLQHPVFNRYHSETELMRYIHHLQSKDLSLAHAMTPLGSC 573


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 105 EKPPSRTLSAGT--PALTSSAINPWTRSVALSIPSSS 1
           E  PS T S+    P+  SSAI P + SV +SI SSS
Sbjct: 127 EYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSS 163


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 350 PWYVENLTFFINVLRHDAVICPHLKDTTGSLSHELGI-LVNQQEPLSL 210
           PWY + + F +++ +      PHLK     L  E     +N+QE +S+
Sbjct: 86  PWYPDGMAFMLDISKEVIRKSPHLKALQEFLVLETEAGDINRQESVSM 133


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -2

Query: 575 FKILDFKLLS--YKDEKMLLKPNTLHP 501
           F I+DF ++   + ++K+L KP T+HP
Sbjct: 481 FTIIDFFMVFALFLNDKILAKPGTVHP 507


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 283 WGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKD 387
           WGQ   + L TF++   F  Y       +++ELKD
Sbjct: 91  WGQFNRAHLPTFLRTPGFKLY-AWVFGCNLSELKD 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,467
Number of Sequences: 5004
Number of extensions: 63632
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)