Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1813
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1530 - 34182235-34182336,34182436-34182543,34183627-341837... 44 9e-05
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879... 44 1e-04
04_04_1531 - 34184899-34185030,34185130-34185240,34185344-341854... 40 0.001
05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130 31 0.67
01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597 31 0.67
05_04_0076 - 17697893-17697922,17698312-17698707 30 2.0
01_05_0331 - 21057957-21058205,21059213-21059791 29 3.5
02_01_0144 - 1038547-1039650 29 4.7
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 28 6.2
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366... 28 8.2
08_01_0074 + 530207-532603 28 8.2
>04_04_1530 -
34182235-34182336,34182436-34182543,34183627-34183748,
34183817-34183961,34184045-34184097,34184187-34184478
Length = 273
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = +2
Query: 2 DEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGG-------XXXXXXXXTYPERLA 160
D+ G+ +A + VH +I EV G+P + + + GFSQGG YP+ L
Sbjct: 120 DDSGVLKAVENVHAMIDKEVADGIPPENIFVCGFSQGGRTSALHCALTLASVLLYPKTLG 179
Query: 161 GVMSLSCWLP 190
G S WLP
Sbjct: 180 GGAVFSGWLP 189
Score = 34.3 bits (75), Expect = 0.094
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 262 DPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLPASK 426
D VV F+ GQ L+ + +F Y GL HS S EL ++ +I+ L AS+
Sbjct: 215 DNVVLFEAGQAGPPFLQNAGFSCEFKAYPGLGHSISKEELYSLESWIKNHLKASQ 269
>04_04_1532 -
34187153-34187308,34187426-34187551,34187856-34187977,
34188058-34188181,34189671-34189821,34190506-34190720,
34191142-34191343,34191423-34191597,34191746-34192055,
34192141-34192356
Length = 598
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/68 (35%), Positives = 32/68 (47%)
Frame = +2
Query: 2 DEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSC 181
DEE + RA VH +I E+ AG V + G SQGG +P+ L G S
Sbjct: 428 DEEDVLRAVQSVHAMIDREIAAGTNPQDVFVFGLSQGGALGIASVLLHPKTLGGCAVFSG 487
Query: 182 WLPRHGYF 205
+LP + F
Sbjct: 488 FLPFNSSF 495
>04_04_1531 -
34184899-34185030,34185130-34185240,34185344-34185465,
34185541-34185664,34185815-34185867,34185984-34186146
Length = 234
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 2 DEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSC 181
DE+ + +A + VH ++ EV AG + + G SQGG YP L G + S
Sbjct: 77 DEKEVLKAVERVHEMLDGEVAAGTSPSNIFVCGLSQGGALAIASVLLYPMTLGGCVVFSG 136
Query: 182 WLP 190
LP
Sbjct: 137 SLP 139
>05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130
Length = 285
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 68 GVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRHG 199
G ++V+L G SQGG +PER+A V+ L+ +P G
Sbjct: 90 GDDEERVVLVGHSQGGFSVALAAERFPERVAAVVFLTAAMPPVG 133
>01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597
Length = 263
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 74 PADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRH 196
P +KV+L G S GG +P+++A + L ++P H
Sbjct: 75 PGEKVVLVGHSLGGINVALAAELFPDKIAAAVFLCAFMPDH 115
>05_04_0076 - 17697893-17697922,17698312-17698707
Length = 141
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 80 DKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRHG 199
++V+L G S GG +PERLA V+ L+ +P G
Sbjct: 84 ERVVLVGHSHGGFSVALAAEWFPERLAAVVFLTASMPPVG 123
>01_05_0331 - 21057957-21058205,21059213-21059791
Length = 275
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 47 IADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLP 190
+ D V+A ++ +L G S GG T+P+++A + ++ +LP
Sbjct: 70 LLDAVRALPDGERAVLVGHSFGGMSVALAAETFPDKVAAAVFVAAFLP 117
>02_01_0144 - 1038547-1039650
Length = 367
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -1
Query: 222 AFKPPGK*PCRGSQQDRDMTPANLSGYVSAAYRANAPP*EKPPSRTLSAGTPALTSSA 49
A +PP P R S TPA S + A A PP EK P +T S A+ ++A
Sbjct: 26 ASQPPA--PPRPSNPRHRKTPAKASKTPAPATAAAPPPVEKRPIKTASDLAAAIRAAA 81
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 401 INSCMSLSSAMDELCASPWYVENLTFFINVLRHDAVI-CPHLKDTTGSLSHE 249
+ SC +L + CAS +E L F ++ LRH V CP L GS S +
Sbjct: 1632 LQSCTALEHLKIQGCASLATLEGLQF-LHALRHMEVFRCPGLPPYLGSSSEQ 1682
>10_08_0485 +
18235597-18236256,18236353-18236400,18236522-18236644,
18237062-18237211,18237702-18237873,18237965-18238025,
18238129-18238237
Length = 440
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = -2
Query: 455 IFSSNKWYIYFDAGRVFSINSCMS--LSSAMDELCASPWY--VENLTFF-INVLRHDAVI 291
I+ S +W+++ A + ++ + M +S D + A+ W+ + L I+VL HD +
Sbjct: 290 IWGSGEWWMFLSA-QSMAVGTIMVRWVSKYSDPIMATGWHMIIGGLPLLVISVLNHDPAL 348
Query: 290 CPHLKDTT 267
HL++ T
Sbjct: 349 NGHLQELT 356
>08_01_0074 + 530207-532603
Length = 798
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 2 DEEGIERATDLVHGLIADEVKAGVPADKV 88
DE ++A L+H ++AD+ + G P D V
Sbjct: 179 DENRSQQALHLLHTMMADDTRGGCPPDVV 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,620
Number of Sequences: 37544
Number of extensions: 383571
Number of successful extensions: 888
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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