Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1813
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical pr... 80 1e-15
AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein ... 79 2e-15
AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein ... 79 2e-15
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 32 0.34
Z70757-10|CAE18045.2| 117|Caenorhabditis elegans Hypothetical p... 29 3.2
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical ... 28 5.6
AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical ... 28 5.6
AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical ... 28 5.6
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 7.4
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 7.4
Z54327-5|CAD57689.1| 238|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z54327-4|CAD42641.1| 132|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z54327-3|CAD36481.1| 596|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z54327-2|CAA91123.1| 658|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF480493-1|AAL84283.1| 596|Caenorhabditis elegans EFF-1B precur... 27 9.8
AF480492-1|AAL84282.1| 658|Caenorhabditis elegans EFF-1A precur... 27 9.8
>Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical
protein K04G2.5 protein.
Length = 223
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/84 (45%), Positives = 49/84 (58%)
Frame = +2
Query: 2 DEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSC 181
DE+GI RAT VH LI EV AG+PA ++ +GGFS GG TYP++L G++ LS
Sbjct: 84 DEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGGIVGLSS 143
Query: 182 WLPRHGYFPGGLKAPVDLPIFQAH 253
+ + FPG A PIF H
Sbjct: 144 FFLQRTKFPGSFTANNATPIFLGH 167
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +1
Query: 262 DPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFI 402
D +V ++GQM+ +K F V+ TY+G+ HSS E++D++ F+
Sbjct: 171 DFLVPLQFGQMSEQYIKKFNPKVELHTYRGMQHSSCGEEMRDVKTFL 217
>AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/84 (45%), Positives = 48/84 (57%)
Frame = +2
Query: 2 DEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSC 181
DE+GI RAT VH LI EV AG+PA ++ +GGFS GG TYP++L G++ LS
Sbjct: 84 DEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGGIVGLSS 143
Query: 182 WLPRHGYFPGGLKAPVDLPIFQAH 253
+ FPG A PIF H
Sbjct: 144 XFLQRTKFPGSFTANNATPIFLGH 167
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +1
Query: 262 DPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDM 390
D +V ++GQM+ +K F V+ TY+G+ HSS E++D+
Sbjct: 171 DFLVPLQFGQMSEQYIKKFNPKVELHTYRGMQHSSCGEEMRDV 213
>AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/84 (45%), Positives = 48/84 (57%)
Frame = +2
Query: 2 DEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSC 181
DE+GI RAT VH LI EV AG+PA ++ +GGFS GG TYP++L G++ LS
Sbjct: 84 DEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGGIVGLSS 143
Query: 182 WLPRHGYFPGGLKAPVDLPIFQAH 253
+ FPG A PIF H
Sbjct: 144 XFLQRTKFPGSFTANNATPIFLGH 167
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +1
Query: 262 DPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDM 390
D +V ++GQM+ +K F V+ TY+G+ HSS E++D+
Sbjct: 171 DFLVPLQFGQMSEQYIKKFNPKVELHTYRGMQHSSCGEEMRDV 213
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 1 protein.
Length = 1383
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = -2
Query: 401 INSCMSLSSAMDELCASPWYVENLTFFINVLRHDAVICPHLKDTTGSLSHELGILVNQQE 222
+ C L + ++LC +P E LT I RH CP D L E NQQ+
Sbjct: 62 VEFCPHLLTGDNKLCCTPSQAEGLTKQIAQARHILGRCPSCFDNFAKLWCEFTCSPNQQD 121
Query: 221 PLSLQGNNHVE 189
+S+ +E
Sbjct: 122 FVSISEMKPIE 132
>Z70757-10|CAE18045.2| 117|Caenorhabditis elegans Hypothetical
protein ZK287.9 protein.
Length = 117
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 595 FGLKCYFSKF*TLNCSPIKM 536
F LKCY S+ T NC PI++
Sbjct: 25 FALKCYDSEMQTANCEPIQL 44
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
W05B2.4 protein.
Length = 2265
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 352 LAHSSSIAELKDMQEFIEKTLPASK*MYHLLLEKIIIHSV 471
L H + I+E ++ +E +EK + AS M+ L+ ++ H V
Sbjct: 1917 LKHIAQISEEEEEEEGVEKRMTASLDMFDLIYSEVDAHDV 1956
>AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical
protein Y37A1B.2d protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 144 YVSAAYRANAPP*EKPPSRTLSAGTPALTSSAINPWTRSVALSIPSS 4
YV+ + PP PP S+G PA +S + W + ++ P S
Sbjct: 55 YVTPYQASRPPPVLPPPLPPTSSGPPAASSRPFDDWGGASEVAAPPS 101
>AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical
protein Y37A1B.2c protein.
Length = 566
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 144 YVSAAYRANAPP*EKPPSRTLSAGTPALTSSAINPWTRSVALSIPSS 4
YV+ + PP PP S+G PA +S + W + ++ P S
Sbjct: 55 YVTPYQASRPPPVLPPPLPPTSSGPPAASSRPFDDWGGASEVAAPPS 101
>AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical
protein Y37A1B.2a protein.
Length = 164
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 144 YVSAAYRANAPP*EKPPSRTLSAGTPALTSSAINPWTRSVALSIPSS 4
YV+ + PP PP S+G PA +S + W + ++ P S
Sbjct: 55 YVTPYQASRPPPVLPPPLPPTSSGPPAASSRPFDDWGGASEVAAPPS 101
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 329 TFFINVLRHDAVICPHLKDTTGSLSHE 249
T + +RH+ + PHL+D T +SH+
Sbjct: 2278 TIMESPIRHEDIPSPHLEDVTPKVSHQ 2304
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 329 TFFINVLRHDAVICPHLKDTTGSLSHE 249
T + +RH+ + PHL+D T +SH+
Sbjct: 2278 TIMESPIRHEDIPSPHLEDVTPKVSHQ 2304
>Z54327-5|CAD57689.1| 238|Caenorhabditis elegans Hypothetical
protein C26D10.5d protein.
Length = 238
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 175 ILLATSTWLFPWRLKGSC*FTNIPSSCDKDPVVSFKWGQMTASCLKTFMKNVKFS 339
+LLA +T+ FP K F P C K P+V + Q S + M+ ++FS
Sbjct: 14 LLLAVTTYGFPLEEKFDGLFRAEPPHCSKTPIVRAQTSQNAMSSIARGMQ-MQFS 67
>Z54327-4|CAD42641.1| 132|Caenorhabditis elegans Hypothetical
protein C26D10.5c protein.
Length = 132
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 175 ILLATSTWLFPWRLKGSC*FTNIPSSCDKDPVVSFKWGQMTASCLKTFMKNVKFS 339
+LLA +T+ FP K F P C K P+V + Q S + M+ ++FS
Sbjct: 14 LLLAVTTYGFPLEEKFDGLFRAEPPHCSKTPIVRAQTSQNAMSSIARGMQ-MQFS 67
>Z54327-3|CAD36481.1| 596|Caenorhabditis elegans Hypothetical
protein C26D10.5b protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 175 ILLATSTWLFPWRLKGSC*FTNIPSSCDKDPVVSFKWGQMTASCLKTFMKNVKFS 339
+LLA +T+ FP K F P C K P+V + Q S + M+ ++FS
Sbjct: 14 LLLAVTTYGFPLEEKFDGLFRAEPPHCSKTPIVRAQTSQNAMSSIARGMQ-MQFS 67
>Z54327-2|CAA91123.1| 658|Caenorhabditis elegans Hypothetical
protein C26D10.5a protein.
Length = 658
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 175 ILLATSTWLFPWRLKGSC*FTNIPSSCDKDPVVSFKWGQMTASCLKTFMKNVKFS 339
+LLA +T+ FP K F P C K P+V + Q S + M+ ++FS
Sbjct: 14 LLLAVTTYGFPLEEKFDGLFRAEPPHCSKTPIVRAQTSQNAMSSIARGMQ-MQFS 67
>AF480493-1|AAL84283.1| 596|Caenorhabditis elegans EFF-1B precursor
protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 175 ILLATSTWLFPWRLKGSC*FTNIPSSCDKDPVVSFKWGQMTASCLKTFMKNVKFS 339
+LLA +T+ FP K F P C K P+V + Q S + M+ ++FS
Sbjct: 14 LLLAVTTYGFPLEEKFDGLFRAEPPHCSKTPIVRAQTSQNAMSSIARGMQ-MQFS 67
>AF480492-1|AAL84282.1| 658|Caenorhabditis elegans EFF-1A precursor
protein.
Length = 658
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 175 ILLATSTWLFPWRLKGSC*FTNIPSSCDKDPVVSFKWGQMTASCLKTFMKNVKFS 339
+LLA +T+ FP K F P C K P+V + Q S + M+ ++FS
Sbjct: 14 LLLAVTTYGFPLEEKFDGLFRAEPPHCSKTPIVRAQTSQNAMSSIARGMQ-MQFS 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,934
Number of Sequences: 27780
Number of extensions: 350980
Number of successful extensions: 776
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -