Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1812
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    36   4e-04
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   1.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = +1

Query: 73  KVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCRL 246
           +VAL+TGA SGIG    E L+ +G KV       ++ + + E+L SK G+   L C L
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDL 65


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 628 HQTTVRESRAHDEASHSGHIDVVLIPVSSGEANNSVVRCC*IGVDT*GLANAVEAVFT 455
           HQ   +    H ++ H  HI+     V SG+   SV++    G+   G+   V+ V T
Sbjct: 796 HQHAAQMIYGHQQSHHGLHINSSPSSVQSGQQQQSVLQ----GLGVQGVQQGVQGVQT 849


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 324 NNAGFMNDRLWELEVDVNLNGVIRGTLLAYRFMGKDRGGQGGVIVNTASTAFAR 485
           NN     + L +   + +L  + RG  L +     D  G G + VN    AF++
Sbjct: 249 NNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEFYMAFSK 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,187
Number of Sequences: 438
Number of extensions: 4946
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)