Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1811
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    96   4e-21
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    29   0.68 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   1.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    26   6.3  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   8.3  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 43/95 (45%), Positives = 63/95 (66%)
 Frame = +1

Query: 232 LERFQTYFILKGIYPREPRNRKRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQ 411
           L  F+   ILKG+YPREP+N+K+A KG+    T Y+TKDI++LLHEPI+ K RE KV+ +
Sbjct: 30  LADFRRICILKGVYPREPKNKKKANKGSTAPVTFYYTKDIQYLLHEPIVQKFREYKVFAR 89

Query: 412 KIRRARAQREYGKMRKFLRDYPEINIDHIVKENTP 516
           K+ +A  + E    ++     P  ++DHI+KE  P
Sbjct: 90  KLSKALGKGELETAKRLEARKPTYSLDHIIKERYP 124



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 27/74 (36%), Positives = 35/74 (47%)
 Frame = +3

Query: 501 KGKYPTFVXXXXXXXXXXXXXXXXSTFPSLKKVPRDQSFLCRRLTVEFMHAVIAAKALRK 680
           K +YPTF                 ST P   K+       C RL  EF H VI + +LRK
Sbjct: 120 KERYPTFHDALKDIDDALSMLFLFSTMPVTDKIGAATVANCERLCAEFQHYVIRSNSLRK 179

Query: 681 VFVSVKGFYYQVDL 722
            F+S+KG YYQ ++
Sbjct: 180 AFLSIKGIYYQAEI 193


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 18/87 (20%), Positives = 38/87 (43%)
 Frame = -1

Query: 673 RALAAITACMNSTVSLLHKNDWSLGTFFNDGKVLNRKHNVRQSSKSRKASTNVGYFPLLC 494
           + L  ++   NST+ L ++ +  L T   D  V  +++ +  SSK +  +  +  F   C
Sbjct: 489 KILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRGC 548

Query: 493 DQCLFLDSPAKTFSSCHILAVLLHDEF 413
            + + +    +T     +   +LH  F
Sbjct: 549 QKAVIVSQYKETLELIELFLSILHVRF 575


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -2

Query: 324 DSACTFLSPLSVSRFS-----GVYSFQNKIRLKSFKDSCSF 217
           D AC FLS L +SRFS          QN IRL+ F D   F
Sbjct: 185 DFACRFLSGLFISRFSVSGDTDESKHQNGIRLQLFIDFSKF 225


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 515 HVC*RFARFGRLSHIVLPIQYFPIIEKSS 601
           H+C   + FG +++IV+P+     +EK S
Sbjct: 236 HICFNSSIFGWVTNIVIPVTEIVSVEKKS 264


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 522 QTWGIFLYYVINVYFWIVPQKLSHLA-IFSLCSCTTNFLLI 403
           + WG+FLY ++  ++W++ +   H A  F    C+  F  I
Sbjct: 304 KVWGLFLYLLLWPFWWLLLKGTIHGAQSFFHAICSPEFASI 344


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 345 FSVIKCFDSACTFLSPLSVSRFSGVYSFQNKIR 247
           + ++  FD+  TF  PL++    G+  F  K+R
Sbjct: 337 WDILNTFDALATFAYPLNLLLNHGIRPFYQKLR 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,818
Number of Sequences: 5004
Number of extensions: 69500
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)