Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1811
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 74 1e-13
09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148 33 0.23
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 29 5.0
11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421 28 6.6
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 28 6.6
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 28 6.6
02_01_0074 + 519401-519512,519513-519548,519647-519706,519785-51... 28 6.6
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482... 28 8.7
06_03_1202 - 28366546-28366899,28367851-28367905,28368238-283682... 28 8.7
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 74.1 bits (174), Expect = 1e-13
Identities = 36/95 (37%), Positives = 57/95 (60%)
Frame = +1
Query: 232 LERFQTYFILKGIYPREPRNRKRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQ 411
L F+ ILKG++PR+P+ +K G KT YH KDI FL H+P+I K RE+KV+++
Sbjct: 33 LATFRKLCILKGVFPRDPK-----KKVEGNHKTYYHMKDIAFLAHDPLIEKFREIKVHRK 87
Query: 412 KIRRARAQREYGKMRKFLRDYPEINIDHIVKENTP 516
K+++A A++ + L P +D ++ E P
Sbjct: 88 KVKKAFAKKNKDLADRLLNRPPTYKLDRLILERYP 122
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 507 KYPTFVXXXXXXXXXXXXXXXXSTFPSLK--KVPRDQSFLCRRLTVEFMHAVIAAKALRK 680
+YPTFV + P+++ +V + CRRL+ E+ + +LRK
Sbjct: 120 RYPTFVDALRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRLSHEWQAYISRTHSLRK 179
Query: 681 VFVSVKGFYYQVDLK 725
F+SVKG YYQ +++
Sbjct: 180 TFISVKGIYYQAEVQ 194
>09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148
Length = 416
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +1
Query: 118 FLNKDNNHNGVQKEEEVFFRRRSSVYDQKSSA*ETTTILERFQTYFILKGIYPREPRNRK 297
FLN + H+ V+ + R S+ + + S T T++ Y L +YP EPR
Sbjct: 211 FLNLEEGHDVVRCRTDEALHRAKSLVNLQFSWYLTATVVFVVVFYLHLTKLYPEEPRYLP 270
Query: 298 RAQKGAGG 321
+ G GG
Sbjct: 271 LVKGGGGG 278
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 298 RAQKGAGGIKTLYHT---KDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLR 468
RAQ G IKT+ H+ + LLH W L+ Q R + +F
Sbjct: 76 RAQLGES-IKTIIHSDYPEQWPVLLH----WVTHNLESENQIFGALYVLRVLSRKYEFKS 130
Query: 469 DYPEINIDHIVKENTPRLLTL 531
+ I + HIV+E PRLL++
Sbjct: 131 EEERIPLYHIVEETFPRLLSI 151
>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
Length = 713
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 606 LLELFSMMGKY*IGSTM*DNRPNLAKRQQTWGIFLYYVINVYFWIVPQK 460
+L+LF ++G Y +GS D ++ G+ +Y VI++ F + +K
Sbjct: 323 ILDLFCLIGAYAVGSCR-DTSTSIYTVALAGGVLIYVVIHILFSTLEKK 370
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 504 LYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 379
L++VI+ F + P L H+ + C N LL+ Q+P
Sbjct: 300 LFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 341
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 504 LYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 379
L++VI+ F + P L H+ + C N LL+ Q+P
Sbjct: 614 LFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 655
>02_01_0074 +
519401-519512,519513-519548,519647-519706,519785-519877,
519968-520033,520146-520223,520300-520407,520478-520554,
520632-520706,520792-520799,520981-521098,521199-521625,
521627-521661
Length = 430
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 TTKQKTFTYYFLNKDNNHNGVQKEEEVFFRRRSSVYDQKSSA*ETTTILERFQTYFILKG 267
T K++ LNK + +G+Q E+ + R RS + D K S+ ++T ILK
Sbjct: 51 TAKKQQLIDLDLNKKISQSGLQLIEQNYNRTRSFIIDAKKSSTRSSTAQSG-----ILKD 105
Query: 268 IYPREPRNRKRA---QKGAGGIKTLYHT 342
+ R+ K+ +G G ++ Y+T
Sbjct: 106 LRERDKNIEKKTISKDEGLGLLEQNYNT 133
>06_03_1507 -
30646168-30646254,30646350-30646490,30648109-30648202,
30648445-30648509,30648934-30649176,30649442-30649499,
30649957-30650037,30650323-30650533,30650975-30651141,
30651216-30651268,30651600-30651681,30651765-30651914,
30652027-30652111,30652189-30652393,30652502-30652573,
30652911-30653456
Length = 779
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 550 QSSKSRKASTNVGYFPLLCDQCL 482
Q+ KS A+ G F LLCD CL
Sbjct: 271 QTCKSSFATLRTGKFALLCDSCL 293
>06_03_1202 -
28366546-28366899,28367851-28367905,28368238-28368275,
28369222-28369375,28369455-28369692,28369845-28369962,
28370258-28370439,28371582-28371664,28372689-28372741,
28373256-28373684
Length = 567
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +1
Query: 310 GAGGIKTLYHTKDIKFL-LHEPIIWKLR---ELKVYQQKIRRARAQREYGKMRKFLRDYP 477
G GG T+Y ++ L + + W + + VY+ R + + KMRK L D+P
Sbjct: 240 GRGGFATVYKLARVQHNNLVKLLGWCIHGKERILVYEFADRGSLQHYIFDKMRKSLLDWP 299
Query: 478 E-INIDHIVKENTPRLLTLCEIWTI 549
+ +NI V E L L +W +
Sbjct: 300 QRVNIIKGVAEGLVYLHKLSMLWIV 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,539,380
Number of Sequences: 37544
Number of extensions: 377700
Number of successful extensions: 770
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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