Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1811
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-7|AAK84463.1|  531|Caenorhabditis elegans Lipid deplete...    96   3e-20
Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical p...    33   0.21 
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    31   0.63 
U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF106573-3|AAF02106.1|  198|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    28   7.8  

>AC006679-7|AAK84463.1|  531|Caenorhabditis elegans Lipid depleted
           protein 7 protein.
          Length = 531

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 47/119 (39%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
 Frame = +1

Query: 232 LERFQTYFILKGIYPREPRNRKRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQ 411
           L+ F+   I+KGIYP EP ++K+A KG+   K  Y+ KDI FL HEPII K R+ KV+ +
Sbjct: 31  LKDFRRLCIIKGIYPHEPAHKKQANKGSTANKVFYYRKDINFLAHEPIINKFRDYKVFLR 90

Query: 412 KIRRARAQREYGKMRKFLRDYPEINIDHIVKENTPRL-LTLCEIWTIVSHCASYSVLSH 585
           K+   +A++E  K++K   + P  ++D IVKE  P     L ++   +S C ++++L H
Sbjct: 91  KLNHLKAKKEEDKLKKLYENKPVYSLDTIVKERFPTFGSALRDMDDALSLCFTFAMLPH 149



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = +3

Query: 501 KGKYPTFVXXXXXXXXXXXXXXXXSTFPSLKKVPRDQSFLCRRLTVEFMHAVIAAKALRK 680
           K ++PTF                 +  P  + +       CR+LT EFMH VI +++LR 
Sbjct: 121 KERFPTFGSALRDMDDALSLCFTFAMLPHTRVLKEGMIDSCRKLTAEFMHYVIESQSLRN 180

Query: 681 VFVSVKGFYYQVDL 722
            F+S+KG YYQ ++
Sbjct: 181 TFISIKGIYYQAEV 194


>Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical
           protein F11A5.15 protein.
          Length = 191

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -2

Query: 537 LAKRQQTWGIFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLL 406
           ++K  +   I++  + N++F+I+P  L  + I+ L SC +N LL
Sbjct: 4   ISKISKRKSIYILIISNIFFFIIPLYLIVIGIWKLTSCPSNQLL 47


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +1

Query: 427 RAQREYGKMRKF--LRDYPEINIDHIVKENTPRLLTLCEIWTIVSHCASYSVLSHH*K-- 594
           RA+ EY  +  F  +R+Y EI    +V E   R L  C+++  V  C   +V + + K  
Sbjct: 458 RAEIEYLGLLGFRNIRNYAEIAYKKVVAEKMKRTLRTCDMYDAVEICLMLAVFNGYPKLA 517

Query: 595 KFQETNHSC 621
            F  T  +C
Sbjct: 518 AFLHTQKAC 526


>U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical
           protein C32D5.6 protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 307 KGAGGIKTLYHT-KDIKFLLHEPIIWKLRELKVYQQ 411
           KGA  I+T Y T +  + L++EP +W  R  KV +Q
Sbjct: 164 KGALNIRTCYQTYRYCEKLMNEPSVWVGRNKKVQEQ 199


>AF106573-3|AAF02106.1|  198|Caenorhabditis elegans Hypothetical
           protein F52D2.10 protein.
          Length = 198

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 348 IFSVIKCFDSACTFLSPLSVSRFSGVYSFQNKIRLKSFKDSCSFLS 211
           +F+     D+   F+  L  S+FS V      +R+ +FKDSCS LS
Sbjct: 83  VFNNHSRLDNIEYFIDYLKRSKFSSVKGIS--LRMFTFKDSCSILS 126


>Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical
           protein C29F3.6 protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -2

Query: 249 RLKSFKDSCSFLSAAFLVIN*APSPEEYFFF-FLDTIVIVILVQKVICKGFLFGCIKY*M 73
           +L +FK+S  +LSA     +   S    F+F F+D + + +  + V   GFL   + + +
Sbjct: 35  KLSAFKNSFGYLSANQAFADALYSSLYLFYFCFMDFLDVFLFQENVFIFGFLV-AVFHDV 93

Query: 72  CVYYYFTSSHILERLMEIW 16
            V  +F  S  L R + +W
Sbjct: 94  SVLTHFIIS--LNRFISVW 110


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 463 LRDYPEINIDHIVKENTPRLLTLCEIWTIVSHCASYSVL--SHH*KKFQETNHSC 621
           + DY EI  + +++     LL  C+++  + HC    +   S   K+F     +C
Sbjct: 344 ITDYAEIAYNEVMRVKKEMLLRTCDLFDAIEHCQLLCIFNRSPFLKQFLHNQKAC 398


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -1

Query: 577  VLNRKHNVRQSSKSRKASTNVGYFPL-LCDQCLFLDSPAKTFSSCHILAVLLHDEFFVDK 401
            + N    V Q  K++K S N     L L D  + +    KT   CH+  V + D      
Sbjct: 1269 ISNSSDEVVQILKNKKLSQNFAASSLSLPDTSIEVPKITKTLIDCHLSPVSIEDRLATRS 1328

Query: 400  PLVPSV 383
            PL+ ++
Sbjct: 1329 PLLANL 1334


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -1

Query: 577  VLNRKHNVRQSSKSRKASTNVGYFPL-LCDQCLFLDSPAKTFSSCHILAVLLHDEFFVDK 401
            + N    V Q  K++K S N     L L D  + +    KT   CH+  V + D      
Sbjct: 985  ISNSSDEVVQILKNKKLSQNFAASSLSLPDTSIEVPKITKTLIDCHLSPVSIEDRLATRS 1044

Query: 400  PLVPSV 383
            PL+ ++
Sbjct: 1045 PLLANL 1050


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,015,524
Number of Sequences: 27780
Number of extensions: 374620
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)