Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1811
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.1  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 505 PLLCDQCLFLDSPAKTFSSCHILAVLLHDEFFVDKPLVPS 386
           P+LCD  + LD    T S   + A+ +     V +PL+ S
Sbjct: 108 PMLCDSWVSLDILLCTASILSLCAISIDRYLAVTQPLIYS 147


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 489 NVYFWIVPQKLSHLAIFSLCSCTTNFLLIN 400
           N Y WIV  K   +A   L     NF ++N
Sbjct: 370 NEYIWIVSNKYQKIANGDLNFNEVNFRILN 399


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 540 NLAKRQQTWGIFLYYVINVYFWIV 469
           N+ +  + +  FL+ V+NV +WI+
Sbjct: 400 NIDRVSRVFFPFLFAVLNVTYWIM 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,468
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)