Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1808
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 29 0.74
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 28 1.3
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 27 3.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 27 3.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 27 3.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 27 3.0
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 26 3.9
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 26 3.9
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 26 3.9
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces... 26 5.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 6.9
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 6.9
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.1
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 28.7 bits (61), Expect = 0.74
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +1
Query: 256 LEKKSEPAQPKPTVHKTNFEKDVVYLYQFSRTPLLPSTSPYCLKVETWLRLAGIKYENVE 435
L +S + PTV ++ V+ + TP + S SP+ K LA +K E E
Sbjct: 239 LPSQSLTGESLPTVSNQEKDEGVIEKVAVNNTPSVSSKSPFPKKKSFSSMLAQVKKEKAE 298
Query: 436 HHAK----YRSKKGQLPFVELNGEEIADTLSSSKIFPRNTTKIL 555
++ + K QL + + A+ +SS+ + ++ K L
Sbjct: 299 NNGSDGYDLQPTKSQLELYQSILRKRANQVSSTSLTKSSSPKPL 342
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 563 TSIKIFVVFLGKIFDDESVSAISSPFSSTNGS 468
TS+K F+ + FDDE I SP ST S
Sbjct: 532 TSVKNFIAEDNEYFDDELAGIIHSPTVSTRSS 563
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 156 FQGCYS*LQQSCLN*ICFV 100
F GCY+ QSC+N +CF+
Sbjct: 87 FLGCYTMGFQSCINMLCFL 105
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 156 FQGCYS*LQQSCLN*ICFV 100
F GCY+ QSC+N +CF+
Sbjct: 87 FLGCYTMGFQSCINMLCFL 105
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 156 FQGCYS*LQQSCLN*ICFV 100
F GCY+ QSC+N +CF+
Sbjct: 87 FLGCYTMGFQSCINMLCFL 105
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 156 FQGCYS*LQQSCLN*ICFV 100
F GCY+ QSC+N +CF+
Sbjct: 87 FLGCYTMGFQSCINMLCFL 105
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.2 bits (55), Expect = 3.9
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +3
Query: 171 EEDMKE-GARGDNGQSK--EAPLPDXKGDENSREKIRTSSAETNSP*NKF*ER-RSISLS 338
+E+M+E G+ N Q E P P+ DEN E+ R S+ ++SP K +R R +L
Sbjct: 29 QEEMEEDGSESGNIQKTLLEDPCPENVNDENEDEQNR--SSRSSSPLVKHEQRHRMYNLK 86
Query: 339 IFAHSFV 359
SF+
Sbjct: 87 EVIKSFI 93
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 156 NAPEKEEDMKEGARGDNGQSKEAPLPDXKGDENSREKIRTSSAETNS 296
N +++E+++E +RG G+S A L + G+E + S+ T+S
Sbjct: 483 NFTKQQEEVREKSRGVQGES-AAHLENVDGEEGIEDSSNDISSTTSS 528
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 518 DESVSAISSPFSSTNGSWPFLERYLA*CST 429
D S S+PFS + S+P + L+ C T
Sbjct: 807 DSGFSRTSTPFSESTSSYPLVSGNLSSCET 836
>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 129 VEVTNNIPENAPEKEEDMKEGARGDNGQSKEAPLPDXKGDENSREKIRTSSAETN 293
+E I E A +KEE+ K+ +G +A K +++ I TSS + +
Sbjct: 39 LEAKREIDEYASKKEEEFKKSESQASGIYSQAEAESKKQVQDTFASIETSSQKNS 93
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 217 KRLHYLMXKAMKILEK 264
+RLH+L+ KA+ +LEK
Sbjct: 1501 ERLHFLLPKALNLLEK 1516
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 111 FNSNMTVEVTNNIPENAPEKEEDMKEGARGDNGQSKEAPLPDXKG 245
F S M + +I +N EKE E + N K +P P +G
Sbjct: 580 FASPMQTDAEGDIVQNEEEKESVEVEEGKHKNDLPKVSPKPPTEG 624
>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 221 LFGLAIIAARAFFHVFLFLRSVFRDVI 141
LF LA A A FH+ +LRSV I
Sbjct: 114 LFSLAPYAIYATFHISTYLRSVLLPAI 140
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +3
Query: 156 NAPEKEEDMKEGARGDNGQSKEAP-LPDXKGDENSREKIRTSSAETNSP 299
+ P K ED+ E G S +P LPD ++K+ S P
Sbjct: 689 HTPSKTEDLDESFSGSEISSSPSPLLPDVSDTVEEQQKLLLKSPPPPPP 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,763
Number of Sequences: 5004
Number of extensions: 52161
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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