Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1808
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0020 + 140220-140312,141282-141665 31 1.0
02_05_0601 - 30278455-30278572,30280211-30280676,30280748-302809... 30 1.3
12_02_0032 + 12495023-12495133,12498408-12498467,12498750-124988... 30 1.8
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683... 30 1.8
02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504 29 2.3
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 29 3.1
10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 29 4.1
03_05_0250 - 22394024-22394148,22394379-22394940 29 4.1
10_04_0007 + 7439378-7439677,7439873-7440308,7440483-7440593,744... 28 5.4
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535... 28 5.4
06_03_0045 - 15844748-15845021,15846349-15846560 28 5.4
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 28 5.4
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 28 5.4
01_01_1229 + 9932535-9932594,9933018-9933095,9933177-9933228,993... 28 5.4
10_08_0716 + 20088311-20088637,20088730-20089107 28 7.1
10_08_0718 + 20091001-20091327,20091426-20091806 27 9.4
10_08_0710 + 20070655-20070990,20071074-20071469 27 9.4
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 27 9.4
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951 27 9.4
>11_01_0020 + 140220-140312,141282-141665
Length = 158
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 593 VRYNPLLRRQTSIKIFVVFLGKIFDDESVSAISSPFSSTNGSWPFLERYLA*CSTFS 423
V+Y+P++RR S K + L + ++V A GSWP R L C T S
Sbjct: 83 VKYSPMIRRCLSSKHSELELAYVVLADTVEATMVSVQVIEGSWPDHMRGLVVCRTAS 139
>02_05_0601 -
30278455-30278572,30280211-30280676,30280748-30280951,
30281065-30281220,30281336-30281738
Length = 448
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -2
Query: 221 LFGLAIIAARAFFHVFLFLRSVFRDVIRNFNSHV*IKFVL*LESAQLLTRIASLTI 54
L LA+ +FF LF + DV+ NF+S + I + L L+ A ++ + L +
Sbjct: 277 LLCLAVYTTTSFFGFLLFGEATLDDVLANFDSDLGIPYSLVLDDAVRVSYVLHLML 332
>12_02_0032 +
12495023-12495133,12498408-12498467,12498750-12498807,
12499006-12499382
Length = 201
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/40 (20%), Positives = 23/40 (57%)
Frame = -3
Query: 556 SRSLLYFSERSLMMKVYRLFLRHSVPRTAVGLFWNDIWHD 437
++ ++ + + ++ ++R ++ + LFWND+W+D
Sbjct: 83 NKGSFWWRDITTLVDIFRGIAKYEIRTGRTALFWNDLWND 122
>04_01_0519 +
6831912-6831978,6832333-6832488,6832748-6833098,
6833481-6833662,6833756-6834004,6834182-6834406,
6837492-6837791,6838642-6839215,6839959-6840059
Length = 734
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = -3
Query: 556 SRSLLYFSERSLMMKVYRLFLRHSVPRTAVGLFWNDIWHDALRSRT*CRPNEAMFQLLSN 377
++ ++ + + + ++R + ++ A LFWND+W+D + + PN L N
Sbjct: 591 NKGSFWWRDITSLSDIFRGIAKCTIQSGATALFWNDLWNDDFKCTS--YPNLFSVTLYKN 648
Query: 376 MGMSTV 359
+ T+
Sbjct: 649 DSVRTM 654
>02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504
Length = 485
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 96 QLQNKFNSNMTVEVTNNIPENAPEKEEDMKEGARGDNGQSKE 221
QLQ + NS++ +E A E+EED +E + G G E
Sbjct: 48 QLQEQMNSSIRMETDEPATMAAGEQEEDEEEESSGGGGAEPE 89
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 114 NSNMTVEVTNNIPENAPEKEEDMKEGARGDNGQSKEAPLPDXKGDENSREKIRTSSAETN 293
N ++ T +PEN + E D GD+ + E D GDE++ E+ E
Sbjct: 50 NRILSKSKTETVPENKDDGESDDDNDEEGDD-EDAENQGDDDAGDEDASEEEGNDEDEDG 108
Query: 294 SP 299
P
Sbjct: 109 DP 110
>10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010
Length = 520
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 412 GIKYENVEHHAKYRSKKGQLPFVELNGEE 498
G KYE +HH+K+ KK + E+ GEE
Sbjct: 60 GEKYETDDHHSKHGHKKRKHSGCEIVGEE 88
>03_05_0250 - 22394024-22394148,22394379-22394940
Length = 228
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 463 LFWNDIWHDALRSRT*CRPNEAMFQLLSNMGMSTVTKECAKIDRDILRL 317
LFW+D+W+D +RS T P+ ++ N ++ CAK D +L
Sbjct: 79 LFWDDMWNDQIRSIT--YPHLCGHAIVRNESLAVT---CAKPFEDCFKL 122
>10_04_0007 +
7439378-7439677,7439873-7440308,7440483-7440593,
7440633-7440762,7440798-7441512
Length = 563
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 138 TNNIPENAPEKEEDMKEGAR--GDNGQSKEAPLPDXKGDENSREK 266
T IP E++K G NG SKEAP D E REK
Sbjct: 261 TGRIPRQTDSSVENVKAITTRGGTNGISKEAPSNDSTDKEVQREK 305
>08_02_0266 +
15051868-15052286,15052376-15052475,15053540-15053581,
15053734-15053930,15055412-15055508,15055604-15055699,
15056395-15056633,15056728-15056811,15056898-15057185,
15057658-15057718,15061093-15061362,15061663-15061722
Length = 650
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 129 VEVTN--NIPENAPEKEEDMKEGARGDNGQSKEAPLPDXKGDENSREKIRTSSAETN 293
V+VT+ N E +PE E + +R + QS+E P+ +GD++ + N
Sbjct: 460 VKVTDIRNTDEVSPESAELSTKPSREEGDQSQEVPISREEGDQSQEVPFSNKQMDHN 516
>06_03_0045 - 15844748-15845021,15846349-15846560
Length = 161
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3
Query: 463 LFWNDIWHDALRS 425
LFW+DIW+D +RS
Sbjct: 85 LFWDDIWNDKIRS 97
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 144 NIPENAPEKEEDMKEGARGDNGQSKEAPLPD-XKGDENSRE 263
++PEN P +KE +G+S L D K EN+R+
Sbjct: 160 DVPENLPASTTTVKEALSAASGKSNNFVLADAIKASENARD 200
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 144 NIPENAPEKEEDMKEGARGDNGQSKEAPLPD-XKGDENSRE 263
++PEN P +KE +G+S L D K EN+R+
Sbjct: 127 DVPENLPASTTTVKEALSAASGKSNNFVLADAIKASENARD 167
>01_01_1229 +
9932535-9932594,9933018-9933095,9933177-9933228,
9933377-9933648,9934016-9934246,9934408-9934554
Length = 279
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 219 LWIGHYRRARLLSCLPLSQERFQGCYS*LQQS 124
LW+G +R + LL PL++++ G + LQQS
Sbjct: 142 LWLGGFRPSELLKLEPLTEQQLSGIAN-LQQS 172
>10_08_0716 + 20088311-20088637,20088730-20089107
Length = 234
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 370 SPYCLKVETWLRLAGIKYENVEHHAKYRSK 459
SP+ +V+ L G+ YEN+E K +S+
Sbjct: 16 SPFASRVKFVFHLKGLSYENIEEDLKNKSE 45
>10_08_0718 + 20091001-20091327,20091426-20091806
Length = 235
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 370 SPYCLKVETWLRLAGIKYENVEHHAKYRSK 459
SP+ +V+ L G+ YEN+E K +S+
Sbjct: 16 SPFVSRVKFVFHLKGLSYENIEEDLKNKSE 45
>10_08_0710 + 20070655-20070990,20071074-20071469
Length = 243
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 370 SPYCLKVETWLRLAGIKYENVEHHAKYRSK 459
SPY L+ + L G+ YENVE +S+
Sbjct: 19 SPYVLRAKFALSFKGLSYENVEEDLHNKSE 48
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -3
Query: 556 SRSLLYFSERSLMMKVYRLFLRHSVPRTAVGLFWNDIWHD 437
++ ++ + + ++ ++R + + LFWND+W+D
Sbjct: 626 NKGSFWWRDVTSLVDIFRGIAKCEIRTGRTALFWNDLWND 665
>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
Length = 563
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +3
Query: 162 PEKEEDMKEGARGDNGQSKEAPLPDXKGDENSREKIRTSSAETNSP*NKF*ERRSISLSI 341
P ++ ++K+ R + ++PLP+ + RE R SS SP K RR SI
Sbjct: 129 PNRDSNLKKTDRPQHKLRSKSPLPNVAPSDVFRE-ARASSRRFTSPPPK---RRGSERSI 184
Query: 342 FAHSF 356
+ SF
Sbjct: 185 YGKSF 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,366,423
Number of Sequences: 37544
Number of extensions: 322580
Number of successful extensions: 1059
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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