Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1808
(633 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011583-1|AAH11583.1| 409|Homo sapiens chromosome 6 open readi... 58 3e-08
BC004869-1|AAH04869.2| 409|Homo sapiens chromosome 6 open readi... 58 3e-08
AL034371-1|CAI19992.2| 409|Homo sapiens chromosome 6 open readi... 58 3e-08
AK057793-1|BAB71576.1| 288|Homo sapiens protein ( Homo sapiens ... 33 1.1
U79666-1|AAB64179.1| 2505|Homo sapiens alpha1A-voltage-dependent... 31 3.4
AF389880-1|AAL93215.1| 3036|Homo sapiens rabconnectin protein. 31 3.4
AF004884-1|AAB61613.1| 2510|Homo sapiens neuronal calcium channe... 31 3.4
AF004883-1|AAB61612.1| 2266|Homo sapiens neuronal calcium channe... 31 3.4
AB035727-1|BAA94766.2| 2506|Homo sapiens alpha1A-voltage-depende... 31 3.4
AB035726-1|BAA94765.1| 2472|Homo sapiens alpha1A-voltage-depende... 31 3.4
BC001460-1|AAH01460.2| 1019|Homo sapiens La ribonucleoprotein do... 30 7.8
AK091465-1|BAC03668.1| 816|Homo sapiens protein ( Homo sapiens ... 30 7.8
AJ242956-2|CAB44704.1| 169|Homo sapiens L2 protein protein. 30 7.8
AB018274-1|BAA34451.1| 1096|Homo sapiens KIAA0731 protein protein. 30 7.8
>BC011583-1|AAH11583.1| 409|Homo sapiens chromosome 6 open reading
frame 168 protein.
Length = 409
Score = 57.6 bits (133), Expect = 3e-08
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = +1
Query: 316 KDVVYLYQFSRTPL-LPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNG 492
KD + L+QF+R +PS SP+CLK+ET+LR+A + Y+N + S +G++P++E N
Sbjct: 97 KDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQN--YFGGKLSAQGKMPWIEYNH 154
Query: 493 EEIADT 510
E+++ T
Sbjct: 155 EKVSGT 160
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 513 FIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLF 626
FII L EK +L+ L +R IS A+ M+E H +
Sbjct: 162 FIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFY 199
>BC004869-1|AAH04869.2| 409|Homo sapiens chromosome 6 open reading
frame 168 protein.
Length = 409
Score = 57.6 bits (133), Expect = 3e-08
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = +1
Query: 316 KDVVYLYQFSRTPL-LPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNG 492
KD + L+QF+R +PS SP+CLK+ET+LR+A + Y+N + S +G++P++E N
Sbjct: 97 KDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQN--YFGGKLSAQGKMPWIEYNH 154
Query: 493 EEIADT 510
E+++ T
Sbjct: 155 EKVSGT 160
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 513 FIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLF 626
FII L EK +L+ L +R IS A+ M+E H +
Sbjct: 162 FIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFY 199
>AL034371-1|CAI19992.2| 409|Homo sapiens chromosome 6 open reading
frame 168 protein.
Length = 409
Score = 57.6 bits (133), Expect = 3e-08
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = +1
Query: 316 KDVVYLYQFSRTPL-LPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNG 492
KD + L+QF+R +PS SP+CLK+ET+LR+A + Y+N + S +G++P++E N
Sbjct: 97 KDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQN--YFGGKLSAQGKMPWIEYNH 154
Query: 493 EEIADT 510
E+++ T
Sbjct: 155 EKVSGT 160
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 513 FIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLF 626
FII L EK +L+ L +R IS A+ M+E H +
Sbjct: 162 FIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFY 199
>AK057793-1|BAB71576.1| 288|Homo sapiens protein ( Homo sapiens
cDNA FLJ25064 fis, clone CBL04883. ).
Length = 288
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/41 (34%), Positives = 28/41 (68%)
Frame = +1
Query: 388 VETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNGEEIADT 510
+ET+LR+A + Y+N + S +G++P++E N E+++ T
Sbjct: 1 METYLRMADLPYQN--YFGGKLSAQGKMPWIEYNHEKVSGT 39
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 513 FIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLF 626
FII L EK +L+ L +R IS A+ M+E H +
Sbjct: 41 FIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFY 78
>U79666-1|AAB64179.1| 2505|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 2505
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 117 SNMTVEVTNNI-PENAPEKEEDMKEGARGDNGQSKEAPLP 233
++ V+V N P+ P+KEE+ KE D G+ P+P
Sbjct: 1180 NHTVVQVNKNANPDPLPKKEEEKKEEEEDDRGEDGPKPMP 1219
>AF389880-1|AAL93215.1| 3036|Homo sapiens rabconnectin protein.
Length = 3036
Score = 31.1 bits (67), Expect = 3.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 414 H*VRERRASCQISFQ--KRPTAVRGTEWRRNSRY 509
H V+ R++S Q SF P AV G WR+ S+Y
Sbjct: 213 HEVKRRQSSTQFSFVYLAHPRAVTGFSWRKTSKY 246
>AF004884-1|AAB61613.1| 2510|Homo sapiens neuronal calcium channel
alpha 1A subunit isoform A-1 protein.
Length = 2510
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 117 SNMTVEVTNNI-PENAPEKEEDMKEGARGDNGQSKEAPLP 233
++ V+V N P+ P+KEE+ KE D G+ P+P
Sbjct: 1183 NHTVVQVNKNANPDPLPKKEEEKKEEEEDDRGEDGPKPMP 1222
>AF004883-1|AAB61612.1| 2266|Homo sapiens neuronal calcium channel
alpha 1A subunit isoform 1A-2 protein.
Length = 2266
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 117 SNMTVEVTNNI-PENAPEKEEDMKEGARGDNGQSKEAPLP 233
++ V+V N P+ P+KEE+ KE D G+ P+P
Sbjct: 1183 NHTVVQVNKNANPDPLPKKEEEKKEEEEDDRGEDGPKPMP 1222
>AB035727-1|BAA94766.2| 2506|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 2506
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 117 SNMTVEVTNNI-PENAPEKEEDMKEGARGDNGQSKEAPLP 233
++ V+V N P+ P+KEE+ KE D G+ P+P
Sbjct: 1179 NHTVVQVNKNANPDPLPKKEEEKKEEEEDDRGEDGPKPMP 1218
>AB035726-1|BAA94765.1| 2472|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 2472
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 117 SNMTVEVTNNI-PENAPEKEEDMKEGARGDNGQSKEAPLP 233
++ V+V N P+ P+KEE+ KE D G+ P+P
Sbjct: 1180 NHTVVQVNKNANPDPLPKKEEEKKEEEEDDRGEDGPKPMP 1219
>BC001460-1|AAH01460.2| 1019|Homo sapiens La ribonucleoprotein
domain family, member 1 protein.
Length = 1019
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 171 EEDMKEGARGDNGQSKEAPLPDXKGDENSREK 266
++DMKE +G+ SKE+ P K DE+ EK
Sbjct: 126 KKDMKEQEKGEGSDSKES--PKTKSDESGEEK 155
>AK091465-1|BAC03668.1| 816|Homo sapiens protein ( Homo sapiens
cDNA FLJ34146 fis, clone FCBBF3011889, weakly similar to
Drosophila melanogaster La related protein (larp) mRNA.
).
Length = 816
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 171 EEDMKEGARGDNGQSKEAPLPDXKGDENSREK 266
++DMKE +G+ SKE+ P K DE+ EK
Sbjct: 203 KKDMKEQEKGEGSDSKES--PKTKSDESGEEK 232
>AJ242956-2|CAB44704.1| 169|Homo sapiens L2 protein protein.
Length = 169
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 343 SRTPLLPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNG 492
S TP+ PSTSP T++ + G +Y + + K+ ++P+ +G
Sbjct: 116 SHTPMWPSTSPTNAATSTYIGIHGTQYYLWPWYYYFPKKRKRIPYFFADG 165
>AB018274-1|BAA34451.1| 1096|Homo sapiens KIAA0731 protein protein.
Length = 1096
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 171 EEDMKEGARGDNGQSKEAPLPDXKGDENSREK 266
++DMKE +G+ SKE+ P K DE+ EK
Sbjct: 203 KKDMKEQEKGEGSDSKES--PKTKSDESGEEK 232
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,410,828
Number of Sequences: 237096
Number of extensions: 1726861
Number of successful extensions: 5182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5178
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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