Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1808
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    27   0.11 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    27   0.11 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.9  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 539 FLGKIFDDESVSAISSPFSSTNGS 468
           FLG I+ +ESVSA+SS +  T  S
Sbjct: 63  FLGDIYTEESVSALSSFYDRTKMS 86


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 539 FLGKIFDDESVSAISSPFSSTNGS 468
           FLG I+ +ESVSA+SS +  T  S
Sbjct: 78  FLGDIYTEESVSALSSFYDRTKMS 101


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 300 MDCWFRLSW 274
           MDC+FR SW
Sbjct: 85  MDCYFRQSW 93


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 300 MDCWFRLSW 274
           MDC+FR SW
Sbjct: 53  MDCYFRQSW 61


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 472 AVGLFWNDIWHDALRSR 422
           A GL W +IW D+L ++
Sbjct: 26  ASGLRWFEIWRDSLPTK 42


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 319 LSQNLFYGLLVSAELVRIFSLEFSSPFXSGNGASLD 212
           ++ NL+Y  L+S  L  + + +FS+P    N    +
Sbjct: 264 VTNNLYYSPLLSHGLYYVDTEQFSNPQYEENNVQYE 299


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 355  LLPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQ 468
            L  S S   + VE  L   G+K      HA   +++G+
Sbjct: 1118 LTSSNSGQLISVENLLAQKGLKLATTASHANQLNRQGK 1155


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 539  FLGKIFDDESVSAISSPFSSTNGSW 465
            F  K+  ++ +++  S   S+NGSW
Sbjct: 1056 FETKLVLEDGITSSGSDSGSSNGSW 1080


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 213 SKEAPLPDXKGDE 251
           SKE  LPD +G+E
Sbjct: 246 SKEYDLPDYRGEE 258


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 213 SKEAPLPDXKGDE 251
           SKE  LPD +G+E
Sbjct: 246 SKEYDLPDYRGEE 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,385
Number of Sequences: 438
Number of extensions: 3590
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)