Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1806X
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689...    30   1.4  

>09_06_0274 +
           21967740-21968230,21968411-21968550,21968711-21968905,
           21969524-21969652,21970063-21970218,21970507-21970589,
           21972229-21972433,21972601-21972805,21973059-21973194,
           21973990-21974164,21974470-21974528,21974642-21974716,
           21974804-21974920,21975010-21975080,21975170-21975473,
           21975721-21976086,21976404-21976514
          Length = 1005

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 272 RVISSCNLTHPMVATATTLCARPLFCIHAKYAGRFALSRRGIQFFTRKGS-SRSRKPPVS 448
           R+ S+  L  P ++       +P   +   +A   +  RRG+ FFT   S   +R PPV+
Sbjct: 555 RIASATLLKFPQISAVRVKVGKPHVALPILFAFLKSSCRRGVFFFTEASSWPETRMPPVN 614


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,541
Number of Sequences: 37544
Number of extensions: 242992
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)