Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1806X
         (559 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058458-1|AAL13687.1|  381|Drosophila melanogaster GH25855p pro...    31   1.1  
AE014296-283|AAF47510.1|  381|Drosophila melanogaster CG18330-PA...    31   1.1  

>AY058458-1|AAL13687.1|  381|Drosophila melanogaster GH25855p
           protein.
          Length = 381

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -3

Query: 545 STAPASIPPS*IEGN--PFLMDYSE-DICL*A-LGYD*RAVYVILNCPSE*KIEFHVGRA 378
           STAPA+ P S +E    P  MD+ +  IC  A   YD +A+  +  C    +I +H+ RA
Sbjct: 14  STAPAT-PTSPMEFKMLPLFMDFEDFSICQPAPFSYDDKAMLELERCDYTQRITYHMARA 72

Query: 377 RTVLRISREY 348
               R  R Y
Sbjct: 73  GKTTRRVRVY 82


>AE014296-283|AAF47510.1|  381|Drosophila melanogaster CG18330-PA
           protein.
          Length = 381

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -3

Query: 545 STAPASIPPS*IEGN--PFLMDYSE-DICL*A-LGYD*RAVYVILNCPSE*KIEFHVGRA 378
           STAPA+ P S +E    P  MD+ +  IC  A   YD +A+  +  C    +I +H+ RA
Sbjct: 14  STAPAT-PTSPMEFKMLPLFMDFEDFSICQPAPFSYDDKAMLELERCDYTQRITYHMARA 72

Query: 377 RTVLRISREY 348
               R  R Y
Sbjct: 73  GKTTRRVRVY 82


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,594,349
Number of Sequences: 53049
Number of extensions: 424202
Number of successful extensions: 975
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)