Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1806X
(559 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr... 28 4.0
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 27 6.9
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 27 6.9
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 27 6.9
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 27 9.1
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 27 9.1
AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical... 27 9.1
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 27 9.1
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 27 9.1
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 27 9.1
>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical protein
H08M01.2b protein.
Length = 1341
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 380 LSRRGIQFFTRKGSS-RSRKPPVSRNRELTDKYLHYNPLKMGYPLFTMAESKRVQLKSPQ 556
LS GIQ + SS RSR+P N L ++ +PL M + E + L +P+
Sbjct: 843 LSSSGIQLLAKPDSSNRSRRPKPVVNSNLRNRVTRTDPLIMSHFYSQPIEIQPAPLATPE 902
Query: 557 S 559
+
Sbjct: 903 A 903
>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical protein
H08M01.2a protein.
Length = 1320
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 380 LSRRGIQFFTRKGSS-RSRKPPVSRNRELTDKYLHYNPLKMGYPLFTMAESKRVQLKSPQ 556
LS GIQ + SS RSR+P N L ++ +PL M + E + L +P+
Sbjct: 843 LSSSGIQLLAKPDSSNRSRRPKPVVNSNLRNRVTRTDPLIMSHFYSQPIEIQPAPLATPE 902
Query: 557 S 559
+
Sbjct: 903 A 903
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 342 FSVFTRNTQDGSRSPDVEFNFSLGRAVQDHVNRPSVVTESSQT 470
F T+D S +VE + LGR V++H P+ V S+T
Sbjct: 124 FEELNAETEDLSERSEVEKDEDLGRVVEEH-KEPAQVPVESET 165
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 342 FSVFTRNTQDGSRSPDVEFNFSLGRAVQDHVNRPSVVTESSQT 470
F T+D S +VE + LGR V++H P+ V S+T
Sbjct: 75 FEELNAETEDLSERSEVEKDEDLGRVVEEH-KEPAQVPVESET 116
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 342 FSVFTRNTQDGSRSPDVEFNFSLGRAVQDHVNRPSVVTESSQT 470
F T+D S +VE + LGR V++H P+ V S+T
Sbjct: 124 FEELNAETEDLSERSEVEKDEDLGRVVEEH-KEPAQVPVESET 165
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
TA+PS NS GERE + + R E + C
Sbjct: 317 TAVPSTSTNSVGGEREAAQIARNLYELKNC 346
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
TA+PS NS GERE + + R E + C
Sbjct: 370 TAVPSTSTNSVGGEREAAQIARNLYELKNC 399
>AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical
protein Y116A8C.14 protein.
Length = 861
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 334 TPAFLYSREIRRTVRALPTWNSIFHSEGQFK 426
TP + + RALPTW SI + GQ K
Sbjct: 83 TPLSFNEEDAEKGTRALPTWASIKRAFGQPK 113
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
TA+PS NS GERE + + R E + C
Sbjct: 317 TAVPSTSTNSVGGEREAAQIARNLYELKNC 346
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
TA+PS NS GERE + + R E + C
Sbjct: 370 TAVPSTSTNSVGGEREAAQIARNLYELKNC 399
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
TA+PS NS GERE + + R E + C
Sbjct: 368 TAVPSTSTNSVGGEREAAQIARNLYELKNC 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,573
Number of Sequences: 27780
Number of extensions: 224799
Number of successful extensions: 409
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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