Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1805X
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF357877-1|AAK27715.1|  835|Caenorhabditis elegans receptor-medi...    27   5.8  
AC006695-13|AAF39978.1|  786|Caenorhabditis elegans Receptor med...    27   5.8  
AC006695-11|AAF39979.1|  835|Caenorhabditis elegans Receptor med...    27   5.8  
EF473218-1|ABQ42570.1|  765|Caenorhabditis elegans Y55D9A.1c pro...    27   7.6  
EF473217-1|ABQ42569.1|  818|Caenorhabditis elegans Y55D9A.1b pro...    27   7.6  
AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical...    27   7.6  
AL032649-5|CAM82814.1|  765|Caenorhabditis elegans Hypothetical ...    27   7.6  
AL032649-2|CAC70120.1|  818|Caenorhabditis elegans Hypothetical ...    27   7.6  
AL032649-1|CAA21701.1|  816|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF357877-1|AAK27715.1|  835|Caenorhabditis elegans
           receptor-mediated endocytosis 1isoform II protein.
          Length = 835

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 342 FSVFTRNTQDGSRSPDVEFNFSLGRAVQDHVNRPSVVTESSQT 470
           F      T+D S   +VE +  LGR V++H   P+ V   S+T
Sbjct: 124 FEELNAETEDLSERSEVEKDEDLGRVVEEH-KEPAQVPVESET 165


>AC006695-13|AAF39978.1|  786|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform a protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 342 FSVFTRNTQDGSRSPDVEFNFSLGRAVQDHVNRPSVVTESSQT 470
           F      T+D S   +VE +  LGR V++H   P+ V   S+T
Sbjct: 75  FEELNAETEDLSERSEVEKDEDLGRVVEEH-KEPAQVPVESET 116


>AC006695-11|AAF39979.1|  835|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform b protein.
          Length = 835

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 342 FSVFTRNTQDGSRSPDVEFNFSLGRAVQDHVNRPSVVTESSQT 470
           F      T+D S   +VE +  LGR V++H   P+ V   S+T
Sbjct: 124 FEELNAETEDLSERSEVEKDEDLGRVVEEH-KEPAQVPVESET 165


>EF473218-1|ABQ42570.1|  765|Caenorhabditis elegans Y55D9A.1c
           protein.
          Length = 765

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
           TA+PS   NS  GERE + + R   E + C
Sbjct: 317 TAVPSTSTNSVGGEREAAQIARNLYELKNC 346


>EF473217-1|ABQ42569.1|  818|Caenorhabditis elegans Y55D9A.1b
           protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
           TA+PS   NS  GERE + + R   E + C
Sbjct: 370 TAVPSTSTNSVGGEREAAQIARNLYELKNC 399


>AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical
           protein Y116A8C.14 protein.
          Length = 861

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 334 TPAFLYSREIRRTVRALPTWNSIFHSGGQFK 426
           TP      +  +  RALPTW SI  + GQ K
Sbjct: 83  TPLSFNEEDAEKGTRALPTWASIKRAFGQPK 113


>AL032649-5|CAM82814.1|  765|Caenorhabditis elegans Hypothetical
           protein Y55D9A.1c protein.
          Length = 765

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
           TA+PS   NS  GERE + + R   E + C
Sbjct: 317 TAVPSTSTNSVGGEREAAQIARNLYELKNC 346


>AL032649-2|CAC70120.1|  818|Caenorhabditis elegans Hypothetical
           protein Y55D9A.1b protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
           TA+PS   NS  GERE + + R   E + C
Sbjct: 370 TAVPSTSTNSVGGEREAAQIARNLYELKNC 399


>AL032649-1|CAA21701.1|  816|Caenorhabditis elegans Hypothetical
           protein Y55D9A.1a protein.
          Length = 816

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 421 TALPSEKLNSTSGEREPSCVFRVNTEKRAC 332
           TA+PS   NS  GERE + + R   E + C
Sbjct: 368 TAVPSTSTNSVGGEREAAQIARNLYELKNC 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,159,836
Number of Sequences: 27780
Number of extensions: 193092
Number of successful extensions: 345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)