Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1803
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    29   0.74 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.1  

>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -2

Query: 317 LCHDMISLVIENDSVKTLEQLF*CSVNKCLRNLNIILQNFFQHGWSLTLFLCFS*HIHST 138
           LC ++  L I ND  K+ E+     V+KCL+NL + L    +      L    S  I+ +
Sbjct: 19  LCDNLPKLEINNDKKKSFEE-----VSKCLQNLRVSLCGTAEVEPDADLVSDLSFQIYQS 73

Query: 137 SLFFLPQMY 111
           +L FL   Y
Sbjct: 74  NLPFLLVRY 82


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/38 (23%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 136 LVLWIC*EKQRKS-VKLHPC*KKFCSMMFKLRRHLLTE 246
           ++ W+   + R +   ++PC  ++CS +F+  +H ++E
Sbjct: 716 MMTWLWEIRHRGAFTSVYPCFIEYCSFLFECNKHEISE 753


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 668 VWVLEFLKVSSCPSYGLSQSTSASILVIIV 757
           V+V+    VSS  S   SQST  SIL++IV
Sbjct: 470 VYVVTVETVSSGSSTYASQSTQTSILLVIV 499


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 566 ESKYIKMNEMSTALLACPDGMRTYQDQLP 480
           E+  I+M  +++ L AC   ++TY  +LP
Sbjct: 832 ENGSIRMEHLTSDLFACTSVLKTYLHRLP 860


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,745
Number of Sequences: 5004
Number of extensions: 66829
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)