Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1803
         (774 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075278-1|AAL68145.1|  204|Drosophila melanogaster AT30094p pro...    94   2e-19
AE014134-1795|AAN10729.1|  204|Drosophila melanogaster CG31717-P...    94   2e-19
BT024276-1|ABC86338.1|  141|Drosophila melanogaster IP14648p pro...    29   7.1  

>AY075278-1|AAL68145.1|  204|Drosophila melanogaster AT30094p
           protein.
          Length = 204

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 42/87 (48%), Positives = 52/87 (59%)
 Frame = +2

Query: 248 TKITALKSLRNHSQLLEISCHGIVWLAGWLTFIWLFNSKDLYQLQVNMXXXXXXXXXXXX 427
           + ++  KSLR HS+ LEISC GI W   W+ FIWL +SK LYQ+QVNM            
Sbjct: 27  SNLSFFKSLRIHSRFLEISCDGIAWFVSWIAFIWLLSSKSLYQMQVNMLFGLILDVVIVA 86

Query: 428 XXXXFVRRRRPVPMNKLMEVGPDKFSF 508
                VRRRRPV    ++ +GPDKFSF
Sbjct: 87  VLKALVRRRRPVASKDMLTIGPDKFSF 113



 Score = 66.1 bits (154), Expect = 5e-11
 Identities = 30/70 (42%), Positives = 41/70 (58%)
 Frame = +1

Query: 508 PSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSISRVLAERHYLLDSXXXXXXXXL 687
           PSGHASRA  +         + IIF  P+ AW VSV+ISR++ +RHY+LD         L
Sbjct: 114 PSGHASRAFFVLLFFAKLYPLHIIFLMPVTAWAVSVAISRLILQRHYILDICAGAAIGVL 173

Query: 688 EGLFMSLIWV 717
           E L + L+W+
Sbjct: 174 EALIVGLLWI 183


>AE014134-1795|AAN10729.1|  204|Drosophila melanogaster CG31717-PA
           protein.
          Length = 204

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 42/87 (48%), Positives = 52/87 (59%)
 Frame = +2

Query: 248 TKITALKSLRNHSQLLEISCHGIVWLAGWLTFIWLFNSKDLYQLQVNMXXXXXXXXXXXX 427
           + ++  KSLR HS+ LEISC GI W   W+ FIWL +SK LYQ+QVNM            
Sbjct: 27  SNLSFFKSLRIHSRFLEISCDGIAWFVSWIAFIWLLSSKSLYQMQVNMLFGLILDVVIVA 86

Query: 428 XXXXFVRRRRPVPMNKLMEVGPDKFSF 508
                VRRRRPV    ++ +GPDKFSF
Sbjct: 87  VLKALVRRRRPVASKDMLTIGPDKFSF 113



 Score = 66.1 bits (154), Expect = 5e-11
 Identities = 30/70 (42%), Positives = 41/70 (58%)
 Frame = +1

Query: 508 PSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSISRVLAERHYLLDSXXXXXXXXL 687
           PSGHASRA  +         + IIF  P+ AW VSV+ISR++ +RHY+LD         L
Sbjct: 114 PSGHASRAFFVLLFFAKLYPLHIIFLMPVTAWAVSVAISRLILQRHYILDICAGAAIGVL 173

Query: 688 EGLFMSLIWV 717
           E L + L+W+
Sbjct: 174 EALIVGLLWI 183


>BT024276-1|ABC86338.1|  141|Drosophila melanogaster IP14648p
           protein.
          Length = 141

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = +1

Query: 514 GHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSISRVL 633
           GHA+RA+++  I+I    V+I+    L+A +V+  ++R+L
Sbjct: 16  GHAARAIVLIVIIILLVVVAILRIIVLVAVIVATILARLL 55


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,236,982
Number of Sequences: 53049
Number of extensions: 703263
Number of successful extensions: 1550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3581842374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)