Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1803
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    36   0.024
AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical...    29   2.8  

>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = +1

Query: 508 PSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSISRVLAERHYLLDSXXXXXXXXL 687
           PSGH+SRA ++  ++ Y  + + ++  P + + + V +SRV   RHY+ D         L
Sbjct: 109 PSGHSSRAAML-LVMAY--NAAPLYVIPFIPFPLVVGLSRVALGRHYITDVLAGIFIGYL 165

Query: 688 EGLFMSLI 711
           E   M  I
Sbjct: 166 EARLMLTI 173


>AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical
           protein T15B7.14 protein.
          Length = 650

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 131 FFLPQMY*LYYFIRVVLCKFYSFTIDT*TYIEFKIKIY 18
           F+L  +  L+YF+ + L  +Y+F  DT ++I+  + +Y
Sbjct: 130 FYLKSVLMLFYFLFIALTSYYAF--DTFSWIQHYVNVY 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,900,217
Number of Sequences: 27780
Number of extensions: 375720
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)