Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1803
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.78 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   3.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   7.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   7.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 450 DVDRYQ*ISSWKLVLISSHSIRTCKQGCAHLVHFNIL*FCINNFLPP 590
           DVD+ + I+ W  V+I++    +   G  H V + I+ F +   + P
Sbjct: 125 DVDKDELITGWSAVVITAAICTSGIVGRTHTVGYIIIGFLLAGIVQP 171


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 553 IYFDSVSIIFYPPLMAWVVSVSISRVLAERHYLLDS 660
           + F ++   F P L+   V   IS V+A RH  L++
Sbjct: 199 VIFSAMGSFFLPMLVMLYVYGRISCVIASRHRNLEA 234


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 391 HINLQLVKIFTIK 353
           ++NL +VK+FTIK
Sbjct: 289 YVNLVIVKVFTIK 301


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 551 KMNEMSTAL-LACPDGMRTYQDQL 483
           ++N  S  L  ACPDG++   D L
Sbjct: 52  RINSKSPLLSCACPDGLKLLSDGL 75


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 551 KMNEMSTAL-LACPDGMRTYQDQL 483
           ++N  S  L  ACPDG++   D L
Sbjct: 52  RINSKSPLLSCACPDGLKLLSDGL 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,832
Number of Sequences: 438
Number of extensions: 4924
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)