Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1800
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.1  
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    27   2.0  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   4.5  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    25   7.9  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   7.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 218  FPGLQSWLLRTPRTFWNRC*SREESTRTTDGSLCTLAHTRSL 343
            +PG++S ++ T  T  N C + E +    D  +C L +T+ L
Sbjct: 1656 YPGIRSLIVDTENTNINGCTTNEGNELLFDNPICLLDNTQPL 1697


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 207 IVKGFPDCSRGFCEPRGRSGTDADREKRVPVPQM 308
           ++KG P    G  EP     +D D E R  V +M
Sbjct: 96  VIKGHPSIDIGSIEPENSKLSDLDEETRATVEKM 129


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = -1

Query: 371 PSQESISLYQGSLCVPKYKGSHLWY-GYSL-LAISIGSRT----SAGFAEATTAV 225
           P+  S+  +   L  PKY+    W+ GY L LA S G  +    +AG  +AT +V
Sbjct: 107 PTSGSLYFWTAYLSPPKYRAFLSWFLGYVLALAYSTGFASTIYAAAGLVQATASV 161


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 371 PSQESISLYQGSLCVPKYKGSHLWY 297
           PS  + ++Y+GS  +PK     LWY
Sbjct: 51  PSSGTKTIYKGSRILPKDSDKVLWY 75


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 133 RYFLASLHFKQWHHKDRLSEHTALVAFLI 47
           + F+++   KQWH KD  +E+  +V  LI
Sbjct: 393 KLFISNEIQKQWHKKDDFTEYEDIVHELI 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,210
Number of Sequences: 5004
Number of extensions: 68403
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)